Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16450 293 / 4e-103 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) AT3G02770 291 / 2e-102 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) AT5G56260 247 / 6e-85 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G085700 [exp] 318 / 3e-113 AT5G16450 282 / 5e-99 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Potri.011G169700 [exp] 248 / 3e-85 AT5G56260 265 / 3e-92 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026835 [exp] 324 / 1e-115 AT5G16450 299 / 1e-105 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Lus10020212 [exp] 324 / 1e-115 AT5G16450 299 / 1e-105 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Lus10032885 [exp] 257 / 8e-89 AT5G56260 279 / 9e-98 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) Lus10027126 [exp] 256 / 2e-88 AT5G56260 278 / 2e-97 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) Lus10020211 [exp] 240 / 1e-82 ND 225 / 8e-77
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF03737 [poplar] [flax] RraA-like Aldolase/RraA
Representative CDS sequence Show only first row Show all	>Potri.019G053800.2 pacid=42774461 polypeptide=Potri.019G053800.2.p locus=Potri.019G053800 ID=Potri.019G053800.2.v4.1 annot-version=v4.1 ATGGCATTGGTTACGACTGCCGAGGTTTGTGACGCAAATCCGCAGCTAATTGTTAGTGGTGAGCTTCGAGCACTCCAACCAATCTTTCAGATTTATGGAC GGCGCCAAGTCTTCTCTGGTCCTGTAGTGACTCTTAAGGTGTTTGAGGACAATGTTTTAATTCGTGAGTTTCTTGAGGAGAAGGGTAATGGCAGAGTTCT TGTTGTTGATGGCGGTGGCAGTTTGCGCTGTGCGATACTTGGAGGCAATCCTGTGGTACAAGCTCAGAACAATGGATGGGCTGGTATAGTGGTTAATGGC TGCATAAGGGATGTTGACGAGATTATGGGTTGTGATATTGGAGTGAGAGCCCTGGCCTCCCATCCAATGAAAGCCAATAAGAAGGGGATTGGAGAGAAAC ATGTTCCTATTACCATAGGTGGCACCAGAATCAGTGATGGAGAATGGCTTTATGCAGATACTGATGGAATCCTGATTTCTCGAACAGAGTTGGCTGTCTG A
AA sequence Show only first row Show all	>Potri.019G053800.2 pacid=42774461 polypeptide=Potri.019G053800.2.p locus=Potri.019G053800 ID=Potri.019G053800.2.v4.1 annot-version=v4.1 MALVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPVVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNG CIRDVDEIMGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRTELAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.019G053800 [exp]	0	1
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.009G118500 [exp]	1.41	0.8170
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.008G189900 [exp]	7.61	0.7600
AT5G57860			Ubiquitin-like superfamily pro...		Potri.006G181400 [exp]	9.16	0.7484
AT5G63220			unknown protein		Potri.010G217400 [exp]	10.48	0.6706
AT2G26210			Ankyrin repeat family protein ...		Potri.006G217100 [exp]	11.31	0.7241
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.012G104500 [exp]	11.61	0.7248	LJLCB2.2
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Potri.013G005500 [exp]	11.87	0.7572
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Potri.012G058900 [exp]	15.55	0.7295
AT3G18430			Calcium-binding EF-hand family...		Potri.018G103600 [exp]	15.87	0.7261
AT5G42000			ORMDL family protein (.1.2)		Potri.003G144600 [exp]	20.24	0.7304

Compare expression of checked genes

Potri.019G053800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.