Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56270 153 / 6e-40 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT2G38470 146 / 5e-38 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT4G26640 144 / 2e-37 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT4G26440 142 / 2e-36 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT5G07100 134 / 3e-36 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G03340 140 / 6e-36 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 138 / 2e-35 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT3G01080 137 / 2e-35 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G30250 120 / 9e-30 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G04880 117 / 2e-28 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G086000 [exp] 516 / 3e-177 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G169300 [exp] 259 / 4e-78 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G472800 [exp] 254 / 4e-76 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.016G128300 [exp] 151 / 2e-39 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 148 / 2e-38 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 147 / 5e-38 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.004G120800 [exp] 144 / 4e-37 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.011G087900 [exp] 144 / 6e-37 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.006G105300 [exp] 142 / 9e-37 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026838 [exp] 363 / 6e-118 AT5G56270 298 / 7e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10020215 [exp] 307 / 3e-98 AT5G56270 276 / 3e-84 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10032887 [exp] 258 / 9e-78 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 254 / 2e-76 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10026409 [exp] 143 / 1e-39 AT2G38470 194 / 3e-59 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 146 / 6e-38 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10016595 [exp] 146 / 1e-37 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10001265 [exp] 145 / 2e-37 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10003769 [exp] 145 / 2e-37 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10032580 [exp] 140 / 7e-37 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G053900.2 pacid=42774056 polypeptide=Potri.019G053902.1.p locus=Potri.019G053900 ID=Potri.019G053900.2.v4.1 annot-version=v4.1 ATGGGCATCAATCCTGGAGCAGCAGCGTCGGTTAAAAGGGAAAGCAGAAATGGTGATGGTAATGCCAGAGGCATTGTTAGTACTGTAGAGAGGAGAGCAG CAAAATGCGGGTTCAAAATGAAGAAATCGGAGAGGATCAATACGGCTCGCTTTCGAACCACCAGCCCTTTGAACTCTCCTTCCGCGACTCCTTTTATAAT CATTCCTCCCGGCGTCAGCCCAACCGCCTTGCTTGATACGCCCGTTATGCTACCCAATTCTCATGGTCAGAGAATGGGTGGTTATGGTGATGGAGATAGG GGAAGTAGTAATTCAAGCGGTCTCTCCTTCAGATTCAAGCCTTATGGTTATGGGGATGCTCTTCCAGGCTTTTGTACTTCAGGAAATCAGGGTAATGATT TTGATTTTGAAGCTAATATCTTGTTGGACCCAGCAATGGATTTTCAATTTCCGATGGGGTTTTCAGAGGAAGCTGCTCTAGAGAAATGCACCAGTGGTTC ACGTACTGATGTGAATGTCTTAGATAGCATGATTGCAAATGCCACTTGCTCTTCTGATTCACCTAGTAATCCCATTTATGTACAAAGCGAAACTATCCAT GAAGAAAACATTGAGTCGCATCATCACCTTTTGGAAGAACAGAAAGGAACATTACCGGCAACAGCAATCGGAAGGACTTCAGATGACGGATACAATTGGA GAAAGTATGGGAAGAAACTGATTAAAGGTAGTAAACATCCAAGAAGCTATTATAAGTGTAACCATGAAAATTGTCTGGTCAAGAAAAAAATAGAATGTGC CCATGATGGTCAAATAACAGGAATCCTTTACAAAGGTACACACAATCACCCTCAGCCTCAGCCAGGTAGTGGAGCGCCACCTGGACCAGCTTCTTCTTTA TATGAAATGCCAGAGATGGGTGAAGGTGGAAACAGTGTTAAGGTTAAAGGTGGATCAGTTCAGAAAAATAGAGAGTCAGGATCCAAGGATATAAAAGTTC ATGATGGGAAGGTTGATGGCCTGGAAAGGACATCCTCAACCTCTGTTGTGACCGAGCTTTCAGATCCGTTATCAGCCGCTCAAGTCAAATCATTAGGAAC ATCTGAATCAACAGAAACTCCAGAGCTTTCCTCCATACTTGCTAGTCATGATGATGGGGTTACTCAGGGAAGCTCATTTAGTGTTGATGTTGATGATGAG TCCGAGTCAAAAAGAAGGAAGATAGAGAGCAGTTTGGTTGAAACAAACATGCCATCAAGGCTTGTCCGCGAACCAAGAGTTGTTGTTCAAGTAGAGAGTG AAGTCGACATACTAGATGATGGGTATCGCTGGAGGAAGTATGGGCAAAAGGTCGTCAAGGGGAATCCAAACCCAAGGAGCTACTATAAATGCACAAGTCC TGGATGTTCAGTAAGGAAGCATGTGGAGAGAGGCTCCCGCAATCTAAAACATGTAATTACAACTTATGAAGGGAAACACGATCATAAAGTGCCTGCGGAG AAACAGCAGTCGCGGATACTCAGCTGGTAG
AA sequence Show only first row Show all	>Potri.019G053900.2 pacid=42774056 polypeptide=Potri.019G053902.1.p locus=Potri.019G053900 ID=Potri.019G053900.2.v4.1 annot-version=v4.1 MGINPGAAASVKRESRNGDGNARGIVSTVERRAAKCGFKMKKSERINTARFRTTSPLNSPSATPFIIIPPGVSPTALLDTPVMLPNSHGQRMGGYGDGDR GSSNSSGLSFRFKPYGYGDALPGFCTSGNQGNDFDFEANILLDPAMDFQFPMGFSEEAALEKCTSGSRTDVNVLDSMIANATCSSDSPSNPIYVQSETIH EENIESHHHLLEEQKGTLPATAIGRTSDDGYNWRKYGKKLIKGSKHPRSYYKCNHENCLVKKKIECAHDGQITGILYKGTHNHPQPQPGSGAPPGPASSL YEMPEMGEGGNSVKVKGGSVQKNRESGSKDIKVHDGKVDGLERTSSTSVVTELSDPLSAAQVKSLGTSESTETPELSSILASHDDGVTQGSSFSVDVDDE SESKRRKIESSLVETNMPSRLVREPRVVVQVESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCSVRKHVERGSRNLKHVITTYEGKHDHKVPAE KQQSRILSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.019G053900 [exp]	0	1
					Potri.005G134850 [exp]	9.38	0.9367
					Potri.006G040201 [exp]	13.85	0.9446
					Potri.014G093150 [exp]	14.89	0.9407
					Potri.010G065733 [exp]	20.00	0.8948
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.008G216400 [exp]	20.78	0.8687
AT1G43760			DNAse I-like superfamily prote...		Potri.014G189001 [exp]	21.21	0.9315
AT2G39020			Acyl-CoA N-acyltransferases (N...		Potri.008G037700 [exp]	22.44	0.8885
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.012G057601 [exp]	24.45	0.9001
					Potri.005G152000 [exp]	27.23	0.8908
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.013G118200 [exp]	27.74	0.9194

Compare expression of checked genes

Potri.019G053900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.