Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47390 935 / 0 PHS1 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) AT4G20960 86 / 1e-17 Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158800 [exp] 89 / 2e-18 AT4G20960 422 / 6e-146 Cytidine/deoxycytidylate deaminase family protein (.1) Potri.014G083000 [exp] 58 / 2e-09 AT4G20960 272 / 6e-91 Cytidine/deoxycytidylate deaminase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020208 [exp] 924 / 0 AT3G47390 885 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10026832 [exp] 920 / 0 AT3G47390 876 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10036431 [exp] 879 / 0 AT3G47390 870 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10041104 [exp] 802 / 0 AT3G47390 791 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10030388 [exp] 95 / 9e-21 AT4G20960 422 / 7e-147 Cytidine/deoxycytidylate deaminase family protein (.1) Lus10037850 [exp] 92 / 6e-20 AT4G20960 430 / 1e-149 Cytidine/deoxycytidylate deaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [poplar] [flax] CDA PF00383 [poplar] [flax] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region CL0387 [poplar] [flax] DHFred PF01872 [poplar] [flax] RibD_C RibD C-terminal domain CL0387 [poplar] [flax] PF08719 [poplar] [flax] NADAR NADAR domain
Representative CDS sequence Show only first row Show all	>Potri.019G054000.1 pacid=42773628 polypeptide=Potri.019G054000.1.p locus=Potri.019G054000 ID=Potri.019G054000.1.v4.1 annot-version=v4.1 ATGGTTCTCTTTTCAGGAACCAAATCCTACTTTTACTCTTCTCCCATACTCTGCAAGTCCACTGCTAGTAACAGCAACCACAGCCATGCTGCCCATTCTC TGGACGCTGCCTACATCAAACGCGCCGCTCAAATCGCTGACAATTCCGCCGGATTCTCCTCTCCCCACCCCAATTTCGGGTGCGTTATCGCCACACATTC CGGAATTGTCGCCGGAGAGGGCTATCTGTACGCGCAGGGGACCAAGGCTGCGGAGGTTCTTGCGGTGGAGGCTGCGGGCGGTTTTAGCAAAGGCAGCACT GCTTATTTGAATATGGAACCTGGTGATTGCCATGGTGACCAATCCGCTGTCTCTGCTCTTGTTCAGGCAGGAATTACAAGAGTTGTGGTTGGAATCAGAC ATCCTTTGCAGCATCTTCATGGGAATGCTATACGCTCACTAAGAGGTCAAGGTTTGCAGGTTGATGTTGTTGGTGAGGATCTAAAGAGTAAAATTATGGA GGAAGCTCGAAAATCTTGCCTACTTGTGAATGCTCCTCTAATTCATCGAGCAACTTCCCAAGTTCCCTTCTCTGTTCTCAAGTATGCTATGACTCTTGAC GGAAAAATTGCCACTACTAGTGGGCATGCAACATGGATAAGCAGCAAGAAATCAAGGAATCGAGTTTTTGAACTACGGGGTAGAAGCGATGCCATTATTG TTGGGGGAAATACTGTACGCAAGGACAATCCACGTTTGACAGCCAGGCATGGAGGTGGGCATACACCCATACGGATTGTAATGACACAAACATTTAATCT TCCTGAGGAGGCAAACCTTTGGGACATTTCTGATGTATCTACCATTGTTGTGACACAAAGGGGTGCCAGAAGGAGCTTCCAGAAATTACTTGCATCCAAA GGAGTCGAAGTGGTTGAGTTTGATATCCTAAATCCTAGAGAAGTTATGGAATACTTTCATGATCGTGGGTATCTTTCCATATTATGGGAGTGTGGAGGGA CACTGGCAGCATCTGCTATTTCATCTGGTGTGATACACAAGGTTTTTGCATTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCGCCATCTCCTGTAGG TGAGCTGGGAATGGTTGAGATGTCACAAGCCTTGGATCTAATTGATGTTTGCTTCGAGCAGGTTGGACCAGACATGCTTATCAGTGGATTTTTACAGCCT GTACCGGACTTGGTACCAGTTATTCCATCAGAGGATGAAACCTTTGCAATTGATCCTTCTATCACCCCTTATGAATCGAGGATCATATTCTTCTATAAAA CATGGGATCCTTATGGAGCTTTTTCGAATTTTTCTCCGCATCCAATTCAAATGCCTGATGGAAGTGGTGCTTATGCCACATGGTCAAGCGTAGAGCACTA TTACCAGGCACACAAGTTTGTGGGGGTGGATGAACCTGTGGCAAAGGATTGTGTTGAGAAGATCAAATTTGCCAAGAGCCCTGAGGAAGCAGCACGAATG GGAAGATCAATGCAGAAGCAGCGCCCAGATCTGGTGAGGTCTGACTGGGAAGGTTTGAAGATTGATGTCATGTATAGAGCATTGAAATGCAAGTTCTCCA TTTATCCTCATTTGCAATCTATGTTGCTATCAACTGCTGGATCTGTTCTTGTTGAAGCTTCTCCACATGATCTTTTTTGGGGTGGTGGGCGGGAAGGGGA AGGCCTAAATTATCTGGGCAGGCTGCTGATGCTCATAAGGTCAGAGTTTCTTGGTGAGTGCTCCTCACCAAGTGAAATCACTTGCGAAGCTCTATAA
AA sequence Show only first row Show all	>Potri.019G054000.1 pacid=42773628 polypeptide=Potri.019G054000.1.p locus=Potri.019G054000 ID=Potri.019G054000.1.v4.1 annot-version=v4.1 MVLFSGTKSYFYSSPILCKSTASNSNHSHAAHSLDAAYIKRAAQIADNSAGFSSPHPNFGCVIATHSGIVAGEGYLYAQGTKAAEVLAVEAAGGFSKGST AYLNMEPGDCHGDQSAVSALVQAGITRVVVGIRHPLQHLHGNAIRSLRGQGLQVDVVGEDLKSKIMEEARKSCLLVNAPLIHRATSQVPFSVLKYAMTLD GKIATTSGHATWISSKKSRNRVFELRGRSDAIIVGGNTVRKDNPRLTARHGGGHTPIRIVMTQTFNLPEEANLWDISDVSTIVVTQRGARRSFQKLLASK GVEVVEFDILNPREVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVFAFVAPKIIGGKNAPSPVGELGMVEMSQALDLIDVCFEQVGPDMLISGFLQP VPDLVPVIPSEDETFAIDPSITPYESRIIFFYKTWDPYGAFSNFSPHPIQMPDGSGAYATWSSVEHYYQAHKFVGVDEPVAKDCVEKIKFAKSPEEAARM GRSMQKQRPDLVRSDWEGLKIDVMYRALKCKFSIYPHLQSMLLSTAGSVLVEASPHDLFWGGGREGEGLNYLGRLLMLIRSEFLGECSSPSEITCEAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Potri.019G054000 [exp]	0	1
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Potri.012G062500 [exp]	1.00	0.8179
					Potri.002G044400 [exp]	4.58	0.7711
AT2G30600			BTB/POZ domain-containing prot...		Potri.002G010100 [exp]	4.89	0.7134
					Potri.016G007450 [exp]	5.29	0.7516
AT3G08890			Protein of unknown function, D...		Potri.006G104000 [exp]	6.70	0.7132
AT5G42370			Calcineurin-like metallo-phosp...		Potri.005G259700 [exp]	7.14	0.6954
					Potri.012G036400 [exp]	8.83	0.7394
AT1G51310			transferases;tRNA (5-methylami...		Potri.001G259000 [exp]	15.62	0.7756
					Potri.017G112500 [exp]	16.97	0.6527
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.017G091000 [exp]	19.62	0.6686

Compare expression of checked genes

Potri.019G054000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.