Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02750 657 / 0 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 521 / 0 Protein phosphatase 2C family protein (.1) AT1G16220 477 / 1e-165 Protein phosphatase 2C family protein (.1) AT1G79630 476 / 4e-165 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 426 / 9e-146 Protein phosphatase 2C family protein (.1) AT4G03415 417 / 2e-142 Protein phosphatase 2C family protein (.1.2) AT5G27930 347 / 3e-116 Protein phosphatase 2C family protein (.1.2) AT3G05640 342 / 1e-114 Protein phosphatase 2C family protein (.1.2) AT5G01700 336 / 9e-112 Protein phosphatase 2C family protein (.1.2) AT3G16800 297 / 4e-97 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G085500 [exp] 809 / 0 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G066200 [exp] 512 / 3e-179 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G473300 [exp] 507 / 3e-177 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G103100 [exp] 444 / 6e-153 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 442 / 5e-152 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 361 / 3e-120 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 356 / 6e-120 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G012200 [exp] 353 / 6e-119 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 357 / 8e-119 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000402 [exp] 531 / 0 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 528 / 0 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10022588 [exp] 469 / 2e-163 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10021486 [exp] 455 / 9e-158 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10041277 [exp] 475 / 3e-156 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10018570 [exp] 445 / 3e-153 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10039802 [exp] 445 / 5e-153 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10037431 [exp] 468 / 1e-152 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10033708 [exp] 414 / 2e-141 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 413 / 7e-141 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.019G054200.6 pacid=42773618 polypeptide=Potri.019G054200.6.p locus=Potri.019G054200 ID=Potri.019G054200.6.v4.1 annot-version=v4.1 ATGGGGTCCTGCTTGTCTGCAGAAAGCAGGAGCCCTCGCCCTGGTACGCCTTCCTCTCCTGGCTTCGGGGTTAGGAAGAGGAAGAACTCCAAAAAGCGTC CAGGGTCTCGGAATTCTTCGTTTGACTATAGGAGGGAAGAGCCACTGCATAGGATTCCTGGAAGGCTGTTCTTGAATGGGTCTAGTGATATCGCTTCATT GTTTACCCAGCAAGGCAAGAAAGGAACCAATCAGGATGCCATGATTGTTTGGGAGAATTTTGGCTCTAGGAGAGATGCAGTTTTCTGTGGTGTTTTTGAT GGCCATGGACCTTATGGTCATATGGTTGCTAAAAGAGTGAGGGATTCTCTCCCCCTGAAACTGACTGCTCATTGGGAAGTGAATGTAGCCAGTGAAGATG TTCTCAGAGAGATCAGCCTTAATACCACAGGGAGCATGAACTCGGAAGATACTTCCTTTATATCTGCTGATGACGAATCTAGGGCCTCTGTTGATCTTGA AGATGCCGAGAAGCACCCAGAGATTTTCCAGACACTGAAAGAGTCATTTCTGAAGGCTTTCAAAATCATGGACCGGGAACTGAGGGTGCATACTAATATT GATTGCTTCTGCAGTGGGACAACAGCAGTTACTTTAGTCAAGCAGGGTCAATATCTTGTCCTTGGAAATGTTGGGGACTCTAGAGCTGTATTGGGTACAA GGGACAAAGATGATTCTCTTGTTGCTGTTCAGTTGACTGTGGATCTCAAACCAAATCTTCCAGTGGAAGCAGAAAGAATCAGGAAGTGTAGAGGACGGGT TTTTGCTCTTCAGGATGAACCTGAGGTATCTAGAGTCTGGCTACCGAATAATGACTCTCCTGGCCTGGCCATGGCACGGGCTTTTGGAGATTTTTGCCTT AAGGATTTTGGTCTCATCTCTGTGCCTGATATTTCTTACCGGTGCTTGACTGAGAAGGATGAATTTATAGTGTTGGCTACAGATGGGATTTGGGATGTGC TCTCAAATAAAGAGGTGGTGGACATTGTTGGATCAGTCCCATCACGTTCCTCTGCTGCGAAAACACTGGTTGAGTTGGCAGTTCGAGCCTGGAGATACAA GTACCCAACCTCCAAAATTGATGACTGTGCCGTAGTTTGCCTCTTCCTCAACTCCAATGATATATCTACCGCTTCTAATACCAAGTCAAATGAACAGCTT ACATCAGTGGACCAAGTTGACAGTGGCAGGCAGAAAGAGGATGATCTCTCAAGTCCAACCGGTCTTGACCGTGCAGGTACTGTGCGGACTGAGAAAGAGG CCCTCTTAGGAGGAAATGCAGAGGAAGATTCCACAAAGCAAGATGAAATGCAATTAGAATATGGAATAGAGTGGTCTGCTCTTGAAGGAGTGTCTCGTGT CAATACTCTGTTGAATCTACCGAGGTTTGTGCCAGGAAAGGAAGAGAAGAAGGCTGCAGGAGAGGCAAAGACTCGAAAATGA
AA sequence Show only first row Show all	>Potri.019G054200.6 pacid=42773618 polypeptide=Potri.019G054200.6.p locus=Potri.019G054200 ID=Potri.019G054200.6.v4.1 annot-version=v4.1 MGSCLSAESRSPRPGTPSSPGFGVRKRKNSKKRPGSRNSSFDYRREEPLHRIPGRLFLNGSSDIASLFTQQGKKGTNQDAMIVWENFGSRRDAVFCGVFD GHGPYGHMVAKRVRDSLPLKLTAHWEVNVASEDVLREISLNTTGSMNSEDTSFISADDESRASVDLEDAEKHPEIFQTLKESFLKAFKIMDRELRVHTNI DCFCSGTTAVTLVKQGQYLVLGNVGDSRAVLGTRDKDDSLVAVQLTVDLKPNLPVEAERIRKCRGRVFALQDEPEVSRVWLPNNDSPGLAMARAFGDFCL KDFGLISVPDISYRCLTEKDEFIVLATDGIWDVLSNKEVVDIVGSVPSRSSAAKTLVELAVRAWRYKYPTSKIDDCAVVCLFLNSNDISTASNTKSNEQL TSVDQVDSGRQKEDDLSSPTGLDRAGTVRTEKEALLGGNAEEDSTKQDEMQLEYGIEWSALEGVSRVNTLLNLPRFVPGKEEKKAAGEAKTRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02750			Protein phosphatase 2C family ...		Potri.019G054200 [exp]	0	1
AT3G07270			GTP cyclohydrolase I (.1.2)		Potri.002G247100 [exp]	2.64	0.8589
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Potri.010G035900 [exp]	6.55	0.8788
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054700 [exp]	7.54	0.8178	Pt-HSP70.6
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054600 [exp]	11.91	0.7834	HSP70.4
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014306 [exp]	19.89	0.8693
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.005G237300 [exp]	22.02	0.8674
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.006G101500 [exp]	24.18	0.8745	FAD3.2
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G145200 [exp]	27.00	0.8585
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G151400 [exp]	30.65	0.8568
AT5G57490		VDAC4, ATVDAC4	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.018G093900 [exp]	31.06	0.7693

Compare expression of checked genes

Potri.019G054200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.