Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12910 636 / 0 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 616 / 0 SCPL21 serine carboxypeptidase-like 21 (.1) AT5G09640 327 / 3e-107 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT3G12203 324 / 1e-106 SCPL17 serine carboxypeptidase-like 17 (.1) AT1G73280 315 / 6e-103 SCPL3 serine carboxypeptidase-like 3 (.1) AT1G73300 307 / 9e-100 SCPL2 serine carboxypeptidase-like 2 (.1) AT3G10450 304 / 1e-98 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT1G73290 304 / 1e-98 SCPL5 serine carboxypeptidase-like 5 (.1) AT5G36180 301 / 2e-97 SCPL1 serine carboxypeptidase-like 1 (.1) AT1G73310 300 / 3e-97 SCPL4 serine carboxypeptidase-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177500 [exp] 671 / 0 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.013G124900 [exp] 334 / 4e-110 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 328 / 9e-108 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 325 / 4e-106 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G290900 [exp] 320 / 3e-104 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 296 / 3e-95 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 287 / 2e-92 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 288 / 6e-92 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.005G091700 [exp] 257 / 5e-80 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026830 [exp] 688 / 0 AT4G12910 595 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 682 / 0 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10025859 [exp] 645 / 0 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020207 [exp] 639 / 0 AT4G12910 553 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 638 / 0 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 610 / 0 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 592 / 0 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 580 / 0 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10007731 [exp] 343 / 2e-113 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 333 / 3e-101 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.019G054300.4 pacid=42773835 polypeptide=Potri.019G054300.4.p locus=Potri.019G054300 ID=Potri.019G054300.4.v4.1 annot-version=v4.1 ATGGATAAGTGGAGCTTTTTCTCTGGTATATCAATTTGCGTCCTTTTGAATTTTGCATCAGTTGAAGCAGCTCCAAAGGGCTCGCTTATCACAGGATTGC CTGGTTTCAATGGCGTTTTCCCATCAAATCACTACTCAGGCTATATAACCTTCGATGATAAGAATCTTTTCTACTACTTCATTGTTTCCGAGAGAAATCC ATCCAAAGATCCCGTGGTTCTGTGGCTTAATGGCGGGCCTGGATGCTCTAGCTTCGACGGCTTCGTTTATGAACATGGGCCATTCAATTTTGAAGAAGGG AAACCTAAAGGAAGCCTGCCAATATTGCATCTCAACCCGTACAGCTGGTCCAAGGTTTCAAACATTATTTATCTGGACTCTCCTTGCGGGGTAGGCATGT CTTACTCCAAAAACCAAAGCAAATATATAAACGATGACCTGCAAACGGCTGCTGATACGCATAATTTTCTCCTCCAGTGGTTTCAGCTATATCCAGAGTT TGTCAACAATCAATTTTACATCTCGGGAGAGTCATATGCTGGGATTTACGTGCCTACACTTTCTGCTGAAGTGGTGAAAGGAATACAGGCAGGTCAAGAT CCTGTCATCAACTTCAAGGGCTACCTGATAGGAAATGGAGTGTCCCACAGCCAATTTGAGGGGTTGAGTGCTCTTGTCCCTTTTACACATGGGATGGGCC TTGTCTCCGACGACATTTTCGAGGAAATTGAACGTGCTTGCAAAGGGAATTATCAAAATGCTAGTGATAGTTGCTATAATAGTATTGGTAAAATTGACCA AGCTCTCTCGGGGCTAAACATTTATGACATCCTTGAGCCTTGTTACCACGATCCAGCATCCGATCAACAAGCGAAAGGAAACACAAGCTCAAATTTGCCG ATTAGCTTCCAGCAATTGGGGGCAACTGACAGGCCTCTCAAGGTGAGGAAGAGAATGTTTGGCCGTGCATGGCCGCTTTGGGCGTTTGAAAAGGACGGTA ATTTCCCATCGTGGTCGGAACTTGCCTTGCAAGGAAGTGTCCCGTGTGTTAACGACGAAGTCGCAACTACATGGCTAAATGACGAATCTGTTAGGACAGC AATTCATGCCGAGCCCAAATCCATCGCCGGACCTTGGCAAATATGCTCCGACAGATTAGATTATAGATACGGCGCCGGAAACATGCTTCCATACCATAAA AATCTTACCGCCCAAGGATATCGAGCCCTTATTTACAGTGGAGACCATGACATGTGTGTGCCATTCACTGGTACGCAAGCGTGGACAAGGTCACTTGGAT ACAAGATAATAGATGAATGGAGGTCTTGGGTGTCTAACGAACAAGTTGCCGGATACTTGCAAGGATATGACAATAACCTAACCTTTCTCACCATCAAGGG GGCAGGGCATACAGTTCCTGAATACAAACCACGAGAGTCGTTGGATTTCTTCAGTCGTTGGTTGGATGGGAAGCCAATATAA
AA sequence Show only first row Show all	>Potri.019G054300.4 pacid=42773835 polypeptide=Potri.019G054300.4.p locus=Potri.019G054300 ID=Potri.019G054300.4.v4.1 annot-version=v4.1 MDKWSFFSGISICVLLNFASVEAAPKGSLITGLPGFNGVFPSNHYSGYITFDDKNLFYYFIVSERNPSKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEEG KPKGSLPILHLNPYSWSKVSNIIYLDSPCGVGMSYSKNQSKYINDDLQTAADTHNFLLQWFQLYPEFVNNQFYISGESYAGIYVPTLSAEVVKGIQAGQD PVINFKGYLIGNGVSHSQFEGLSALVPFTHGMGLVSDDIFEEIERACKGNYQNASDSCYNSIGKIDQALSGLNIYDILEPCYHDPASDQQAKGNTSSNLP ISFQQLGATDRPLKVRKRMFGRAWPLWAFEKDGNFPSWSELALQGSVPCVNDEVATTWLNDESVRTAIHAEPKSIAGPWQICSDRLDYRYGAGNMLPYHK NLTAQGYRALIYSGDHDMCVPFTGTQAWTRSLGYKIIDEWRSWVSNEQVAGYLQGYDNNLTFLTIKGAGHTVPEYKPRESLDFFSRWLDGKPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Potri.019G054300 [exp]	0	1
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.010G114000 [exp]	2.44	0.9297	MYB165
AT3G26590			MATE efflux family protein (.1...		Potri.019G063500 [exp]	3.00	0.9264
AT2G15580			RING/U-box superfamily protein...		Potri.018G114500 [exp]	5.47	0.9123
					Potri.013G031800 [exp]	5.47	0.9253
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.002G245400 [exp]	6.32	0.9043	RIN4.1
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063600 [exp]	7.48	0.9254
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.003G054900 [exp]	8.36	0.8935
AT5G01450			RING/U-box superfamily protein...		Potri.016G116300 [exp]	9.38	0.8690
AT1G28310	DOF	AtDof1. 4	Dof-type zinc finger DNA-bindi...		Potri.004G046600 [exp]	10.24	0.8928
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.002G231700 [exp]	12.00	0.8894

Compare expression of checked genes

Potri.019G054300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.