Plant FIBer expression Database

Potri.019G054400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16390 117 / 5e-31 CAC1-A, BCCP-1, CAC1A, BCCP1, CAC1 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
AT5G15530 110 / 2e-28 BCCP2, CAC1-B biotin carboxyl carrier protein 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G119000
[exp]
117 / 5e-31 AT5G15530 173 / 7e-53 biotin carboxyl carrier protein 2 (.1)
Potri.017G092500
[exp]
116 / 2e-30 AT5G16390 191 / 1e-59 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004868
[exp]
99 / 1e-23 AT5G16390 212 / 2e-67 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
Lus10020619
[exp]
96 / 1e-22 AT5G16390 204 / 9e-65 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0105 Hybrid PF00364 Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence
>Potri.019G054400.5 pacid=42774545 polypeptide=Potri.019G054400.5.p locus=Potri.019G054400 ID=Potri.019G054400.5.v4.1 annot-version=v4.1
ATGGCTTCTTCACTATCAACCACAGCTTCTGCTTCTATGGTGACCAAAAGCGCCGCCATTTTGCCTCACTACAACACTCACAGGTTATCCACCCAGTCGT
TTCGGCTCTCTCAGAAACCAAAGCTCCGATTTCTTGCTAAGGGTTTGCAGCCTACTCGTGATGGTACATATTTGGTGAAAGCTCAATTGAATGAGGTAAG
CTTCTTTCAATGGTTTTCTTTAGAGGATCTGTTTTCAAATTTTTGTTCCTTCCTGGACAAGCTTTTGGGATCATCTGTTGCCTTCAAGGTTGCTGTGGAT
GGATCCTCAAATGCTGCAGCCTCAACTCTTGCCAAATCTGAAGTACCATTGCAGGAAGCAAAGGATGCCAAGCCATCAAATGAACCTTCACCTCCCTCTT
TGGCTACAGAGGAGTCAATCTCTGAATTTATTTCCCAAGTTTCAAGTCTTGTGAAGCTTGTTGATTCAAGAGATATTGTGGAACTGCAGTTGAAACAACT
TGATTGTGAACTTTTAATCAGAAAAAAGGAGGCTTTGCCTTTGCCACCATACCATTCTCCAGTTGTTATGATGCATTCACATCCACCTCCACCTCCACCC
GTAATGCCAGCAGCCACACCTGCAGCTTCTGCTGCAGCTCCTGCCGCAGCTTCTAGTCCATCACCTTCTGCCATATCACCATCTCCTCCTTCCAAATCAG
TCAAGTCATCCCTTCCACCATTCAAATGCCCTATGGCTGGCACATTTTACAGAAGCCCTGCACCTGGTGAACCGTCATTTGTAAAGGTTGGAGACAAAGT
GCAGAAGGGGCAGGTTGTATGCATCATTGAAGCCATGAAATTGATGAACGAAATAGAGGCAGATCAAACGGGAACCATAGTGGAGATCCTTGCTGAAGAT
GGCAAGCCAGTCAGTGTTGATACACCTCTATTCGTGATTGAACCATGA
AA sequence
>Potri.019G054400.5 pacid=42774545 polypeptide=Potri.019G054400.5.p locus=Potri.019G054400 ID=Potri.019G054400.5.v4.1 annot-version=v4.1
MASSLSTTASASMVTKSAAILPHYNTHRLSTQSFRLSQKPKLRFLAKGLQPTRDGTYLVKAQLNEVSFFQWFSLEDLFSNFCSFLDKLLGSSVAFKVAVD
GSSNAAASTLAKSEVPLQEAKDAKPSNEPSPPSLATEESISEFISQVSSLVKLVDSRDIVELQLKQLDCELLIRKKEALPLPPYHSPVVMMHSHPPPPPP
VMPAATPAASAAAPAAASSPSPSAISPSPPSKSVKSSLPPFKCPMAGTFYRSPAPGEPSFVKVGDKVQKGQVVCIIEAMKLMNEIEADQTGTIVEILAED
GKPVSVDTPLFVIEP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G16390 CAC1-A, BCCP-1,... BIOTIN CARBOXYL-CARRIER PROTEI... Potri.019G054400
[exp]
0 1
AT4G03270 CYCD6;1 Cyclin D6;1 (.1) Potri.019G118600
[exp]
8.71 0.8885
AT4G25080 CHLM magnesium-protoporphyrin IX me... Potri.012G106600
[exp]
11.18 0.9222
AT5G63310 NDPK1A, NDPKIAI... NDP KINASE 1A, NUCLEOSIDE DIPH... Potri.012G093800
[exp]
12.80 0.9146
AT2G06520 PSBX photosystem II subunit X (.1) Potri.006G222300
[exp]
15.09 0.9209
AT1G06680 PSII-P, OEE2, P... OXYGEN-EVOLVING ENHANCER PROTE... Potri.005G206700
[exp]
21.00 0.9151 OEE2.1
AT1G32990 PRPL11 plastid ribosomal protein l11 ... Potri.011G150700
[exp]
23.43 0.8803
AT5G24460 unknown protein Potri.010G149800
[exp]
23.95 0.9113
AT3G48730 GSA2 glutamate-1-semialdehyde 2,1-a... Potri.015G101100
[exp]
25.63 0.9110 Pt-GSA1.1
AT3G25920 RPL15 ribosomal protein L15 (.1) Potri.008G121100
[exp]
30.00 0.9131
AT4G10340 LHCB5 light harvesting complex of ph... Potri.019G063101
[exp]
32.98 0.9111

Potri.019G054400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.