Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24090 1157 / 0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1) AT2G16570 51 / 2e-06 ATASE1, ATASE GLN phosphoribosyl pyrophosphate amidotransferase 1 (.1) AT4G38880 51 / 3e-06 ATASE3 GLN phosphoribosyl pyrophosphate amidotransferase 3 (.1) AT4G34740 50 / 3e-06 CIA1, ATASE2, ATPURF2, ATD2 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G164000 [exp] 58 / 2e-08 AT4G34740 891 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Potri.009G125600 [exp] 58 / 2e-08 AT4G34740 882 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020198 [exp] 1196 / 0 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1) Lus10026998 [exp] 462 / 1e-156 AT3G24090 457 / 1e-154 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1) Lus10035459 [exp] 59 / 8e-09 AT4G34740 837 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10042058 [exp] 52 / 1e-06 AT4G34740 826 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0067 [poplar] [flax] SIS PF01380 [poplar] [flax] SIS SIS domain CL0052 [poplar] [flax] NTN PF13522 [poplar] [flax] GATase_6 Glutamine amidotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.019G054500.4 pacid=42773278 polypeptide=Potri.019G054500.4.p locus=Potri.019G054500 ID=Potri.019G054500.4.v4.1 annot-version=v4.1 ATGTGTGGGATATTTGCGTATTTGAATTACAACGTCAATAGGGAGAGGAGATTTATTCTCCAAATTCTCTTCAACGGACTCAGGCGTCTTGAATATAGAG GATATGATTCCGCCGGGGTTTCCATTGATCACAACCAACCTCTTGTTTTCCGTCAGGAAGGAAACATCGAATCCCTTGTCAAATCTGTCTATCAAGAGGC TGATGCCATGGGTTTAGATTTGGAAGAATCCTTTTGTGTCCATGCTGGAATAGCACACACCCGCTGGGCTACTCATGGAGAGCCTGCTCCAAGGAATAGC CATCCACAAACATCTGGTGATGGAAATGAATTCCTTGTTGTTCACAATGGCGTCATAACTAATTATCAGGTGTTAAAGGAAACACTTATTCGACATGGGT TCACCTTTGAATCTGAAACCGACACAGAAGTAATACCAAAGCTTGCAAAATTTGTCTTTGACAAAGCAAATGAAGGAGAAGGTAGTTCTCATACTGTCAC ATTTAGTGAAGTTGTGCTTGAAGTCATGAGGCATCTTGAAGGAGCCTATGCCCTCATTTTTAAGAGCCTACATTATCCAAATGAGTTAATTGCATGCAAA CGTGGAAGTCCATTGCTCTTGGGTGTTAAAGAATTAAATGAAGAGTTTAACAGCGGACCAACATTTCATGATTCTAAATTCCTCTCAAATAATGACCATC CAAAAGAGCTGTTTCTGTCCAGTGATGCTCATGCTATTGTTGAGCACACAAAAAAGGTCTTGGTGATTGAGGATGGTGAAGTAGTTCATCTTAAGGATGG AAATGTGTCAATCCTGAAGTTTGACAATGACAAGGGAAGACATGGAGGTTCCCTCTCTAGACCTGCATCAGTGCAACGTGCATTATCTGTTCTTGAGATG GAAGTTGAACAAATAAACAAAGGAAACTATGAACATTACATGCAGAAAGAAATCCATGAACAGCCAGAATCTCTAAAAACCACCATGAGGGGGAGGCTTA TACGTGGAGGCTCCTGCAAAGCCAAGACTGTTCTTTTAGGTGGACTCAAGGATCACTTTAAAACAATTAGAAGGAGTCGACGTATTGTTTTCATTGGTTG TGGTACAAGCTATAATGCTGCTCTAGCTGCTAGACCCATCCTGGAAGAACTTTCTGGTGTCCCTGTCACTATGGAAATTGCAAGTGATCTGTTGGATCGT CAAGGTCCTATATACAGAGAAGATACAGCAGTCTTTGTCAGCCAGTCTGGTGAAACTGCAGATACATTAAATGCGTTGGAATATGCTTTAGAAAATGGTG CATTGTGTGTAGGCATAACAAACACTGTTGGCAGTGCAATAGCTAGGCGTACACATTGTGGTGTTCATATAAATGCAGGCGCCGAAATAGGCGTGGCAAG CACCAAGGCATACACAAGTCAGATAGTAGTGATGGCCATGTTAGCCCTAGCAATCGGAGGTGATGCAATTTCTAGTCAAACGAGAAGAGAGGCTATAATA GATGGTCTATTTGACTTGCCAAACAAGGTCAGGGAGGTCCTGAAGCTTGACCAGGAAATGAAGGATCTTGCAAAACTTTTGATTGCGGAGCAGTCTCTTC TTGTGTTTGGGAGAGGTTACAACTATGCAACGGCTTTGGAGGGTGCCTTAAAGGTTAAGGAAGTAGCACTTATGCACAGTGAAGGAATGCTTGCTGGTGA AATGAAACATGGTCCTTTGGCATTAGTTGATGAGAATCTTACTATTATTGTCATTGCTACTCGCGATTCCTGCTTCAGCAAGCAACAGTCAGTCATTCAG CAACTTCATGCCCGCAAAGGTCGCTTAATAGTCATGTGTTCAAAAGGTGATGCTGTGTCTGCATGCCCTGGAGGATTTGGTAGAGTAATTGAAGTTCCAC AGGTTGAGGATTGTCTTCAACCTGTAATTAATATAGTTCCTTTGCAGTTACTGGCATATCATCTGACTGTTCTAAGGGGTTACAATGTTGACCAGCCACG CAATCTGGCGAAGAGCGTGACGACACAGTAA
AA sequence Show only first row Show all	>Potri.019G054500.4 pacid=42773278 polypeptide=Potri.019G054500.4.p locus=Potri.019G054500 ID=Potri.019G054500.4.v4.1 annot-version=v4.1 MCGIFAYLNYNVNRERRFILQILFNGLRRLEYRGYDSAGVSIDHNQPLVFRQEGNIESLVKSVYQEADAMGLDLEESFCVHAGIAHTRWATHGEPAPRNS HPQTSGDGNEFLVVHNGVITNYQVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEGEGSSHTVTFSEVVLEVMRHLEGAYALIFKSLHYPNELIACK RGSPLLLGVKELNEEFNSGPTFHDSKFLSNNDHPKELFLSSDAHAIVEHTKKVLVIEDGEVVHLKDGNVSILKFDNDKGRHGGSLSRPASVQRALSVLEM EVEQINKGNYEHYMQKEIHEQPESLKTTMRGRLIRGGSCKAKTVLLGGLKDHFKTIRRSRRIVFIGCGTSYNAALAARPILEELSGVPVTMEIASDLLDR QGPIYREDTAVFVSQSGETADTLNALEYALENGALCVGITNTVGSAIARRTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDAISSQTRREAII DGLFDLPNKVREVLKLDQEMKDLAKLLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGMLAGEMKHGPLALVDENLTIIVIATRDSCFSKQQSVIQ QLHARKGRLIVMCSKGDAVSACPGGFGRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	0	1
AT4G30790			unknown protein		Potri.018G103000 [exp]	2.23	0.9092
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Potri.008G174100 [exp]	3.87	0.8652
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Potri.002G082400 [exp]	4.00	0.8793
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Potri.001G378400 [exp]	4.58	0.8552	GA2ox1,GA2.7
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	6.16	0.8900
AT2G40095			Alpha/beta hydrolase related p...		Potri.010G189600 [exp]	6.70	0.8883
AT1G68710			ATPase E1-E2 type family prote...		Potri.012G058000 [exp]	7.00	0.8776	Pt-ALA9.2
AT1G66930			Protein kinase superfamily pro...		Potri.017G117400 [exp]	8.83	0.8669
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335300 [exp]	10.95	0.8741	Pt-LHT1.2
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017666 [exp]	11.31	0.8619

Compare expression of checked genes

Potri.019G054500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.