Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24706 2262 / 0 EMB2793, AtTHO2 EMBRYO DEFECTIVE 2793, THO2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G085000 [exp] 3244 / 0 AT1G24706 2284 / 0.0 EMBRYO DEFECTIVE 2793, THO2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035106 [exp] 2526 / 0 AT1G24706 2224 / 0.0 EMBRYO DEFECTIVE 2793, THO2 (.1.2) Lus10031945 [exp] 2518 / 0 AT1G24706 2191 / 0.0 EMBRYO DEFECTIVE 2793, THO2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11262 [poplar] [flax] Tho2 Transcription factor/nuclear export subunit protein 2
Representative CDS sequence Show only first row Show all	>Potri.019G054600.1 pacid=42774394 polypeptide=Potri.019G054600.1.p locus=Potri.019G054600 ID=Potri.019G054600.1.v4.1 annot-version=v4.1 ATGTCAACAACTCTCCCTCCCATGGAGTGTTTGTATGTAACTGAAGAATTTCTCCGTGAATTGAAGGGCGGAAACCATAGCTTCCGTCTCCCTCACCCTG TGCCTATTCTTCGATTTCTCTACGAGCTCTCCTGGAACTTGGTTCGAGGAGAACTGCCGTTTCAAAAGTGCAAAGCGGCTCTGGATTCTGTGGAGTTTGT TGATAAAGTGTCTGCCGTAGGGCTGGGTTCGAATTTCGCTGATATTATTACTCAAATGGCTCAAGATCTAACAATGTCTGGAGAGTACCGTTCTCGTCTC ATAAAGTTGGCAAAATGGCTGGTCGAATCTGCATTGGTCCCATTGAGGTTTTTCCAAGAGCGTTGTGAGGAGGAATTTCTGTGGGAAGCTGAAATGATAA AGATAAAGGCTCAAGACTTGAAGGGCAAAGAGGTCAGGGTAAACACACGTCTTCTTTATCAGCAAACAAAATTTAACCTTCTCCGCGAAGAGAGTGAGGG CTATGCCAAACTGGTTACTCTTCTCTATCAAGGTTCTGAAGATACAACTGAAAATACATCAGCAGCGACAATAGGCATCATTAAGTCATTGATTGGTCAT TTTGATTTGGACCCAAATCGTGTTTTTGACATTGTTTTAGAGTATTTTGAACTTCAGCCTGATAGCAATGTCTTTTTGGAATTGATACCCATCTTTCCTA AGTCGCATGCATCGCAAATTCTTGGTTTTAAGTTTCAATATTATCAGCGAATTGAATTAAATAGCCATGTCCCATTTGGGCTCTATAAGCTTACAGCTTT GCTGGTGAAGGAAGAGTTCATTGATCTTGATAGCATATGTGCACATTTACTTCCCAAGGATGACGAGGCTTTTGAGCATTATAATACATTTTCTTCTAAA CGGCTGGATGAGGCTAACAAAATTGGAAAAATAAATCTGGCTGCTACTGGAAAAGACCTCATGGATGATGAGAAACAAGGAGATGTGACCGTAGATCTTT TTGCTGCCTTAGACATGGAAGCTGAGGCAGTAGCCGAACGATTCTCTGAGCTTGAAAACAATCAAACTTTAGGCTTGCTAACTGGTTTCCTTTCTGTGGA TGACTGGTATCATGCCCATGTACTTTTTGAACGTCTCTCTCCTCTCAATCCAGTTGCACATACTCAAATATGTAACGGCTTATTTAGGCTCATTGAAAAG TTGGTCTCATCAGCATATAATATTATTCGTCAAACACATATTCAAAGTTGTGGGTCACCAAGAATTGCTGGTATTGATGCTATGGGCGTGACAAGTTCTT CAGGCCATGTCTCTTTCATTGATCTTCCCAAAGAGTTTTTTCAGATGCTTGTCACTGTTGGACCTTATCTTTACCGTGATACATTATTGCTGCACAAGGT GTGTAGAGTGTTAAGAGGTTACTATATGTCTGCACTTGAGCTTGTAGATAGTGGTGATGGAGCTCTAAATGGTGAACTTCTTATTCCTGGAAATCGAGTT CCTCGTTTGCACCTAAGGGAAGCTAGGTCAAGGGTTGAGGAAGCCCTTGGAGCATGTTTACTTCCTTCTTTACAGTTGGTACCTGCAAATCCAGCTGTTG GGCAGGAGATCTGGGAAGTAATGAGTCTCCTTCCTTACGAGGTGCGATATCGTTTATATGGTGAATGGGAAAAAGATGATGAGCGGAATCCAGTGATTTT GGCTGCTAGACAAACAGCCAAGTTGGATACTAGAAGGATATTGAAAAGGCTTGCGAAGGAAAATTTGAAGCAGCTGGGTAGGATGGTTGCAAAATTAGCT CATGCTAACCCGATGACTGTCCTTAGAACAATTGTTCACCAGATTGAGTCGTACAGGGATATGATCTCTCCTGTTGTAGATGCTTTCAAGTATTTGACTC AGCTCGAGTATGATATTTTGGAATATGTTGTTATTGAGCGGTTAGCGCAAGGTGGCCGTGATAAGCTGAAAGATGATGGCCTTAATTTGTCAGACTGGCT TCAATCACTGGCTTCATTCTGGGGTCACCTGTGTAAGAAGTATCCATCTATGGAATTGAGAGGCCTTTTCCAGTATCTAGGAAATCAGTTGAAAAAGGGC CAGGGGATTGAGCTTGTTCTTCTGCAGGAGCTTCTTCAACAAATGGCAAATGTTCAATACACAGAGAACCTAACAGAGGAACAGTTGGATGCAATGGCAG GGAGTGAGACTCTTCGGTATCAAGCTACTTCTTTTGGTGTAACCCGAACTAACAAGGCACTGTTCAAATCTGCTAACAGGCTACGAGACTCATTGCTTCC TAAGGATGAACCGAAGCCAGCGATCCCCCTTTTGTTACTTATTGCTCAACATCGTTCTGTGGTTGTCATAAATGCGGATGCACCTTACATTAAAATGGTC AGTGAGCAGTTCGATAGGTGTCATGGAACCCTTCTTCAATATGTGGAATTCCTCTGTAGTGCTGTGACGCCACCCTCAGCATATGCTCAGTTGATTCCCT CTCTTGATGATCTTGTCCACCTGTACCACCTTGATCCTGAGGTTGCATTTTTAATATATCGCCCAGTCATGAGGCTTTTCAAGTGCGCTGGCAGTTTAGA TGTTTTCTGGCCCTTGGAAAACAATAAAACAGTAACTAATACAAGTGCAATCCTGGAGCCTGAAGCCATAGAATGTTCTGGCGGAGTGATTCTGGATCTT GGCTCTTCCCATAAGTCTGTAACGTGGTCGGATCTTCTTGAGACTGTGAAAACCATGTTGCCTTCAAAAGCCTGGAATAGTCTCTCACCTGATCTCTATG CAACTTTTTGGGGACTCACACTTTATGATCTCTATGTTCCTAGAAACCGTTACGAGTCTGAAATTGCCAAGCAGCATGCTGCTCTTAAAGCTCTGGAAGA GCTTTCTGATAATTCTAGTTCAGCAATTACTAAAAGGAAGAAAGAGAAGGAAAGGATTCAAGAATCTCTTGATCGTTTGACTAGTGAGCTCCGTAAACAT GAAGATAATGTTTCATCTGTTCGTAGACGACTCTCTTGTGAAAAGGACAAATGGCTGACTTCCTGTCCTGATACTTTGAAAATCAATATGGAGTTCCTTC AGCGTTGTATTTTTCCCCGTTGTACTTTCAGCATGCCAGATGCTGTTTATTGTGCCATGTTTGTACATACTCTTCATTCACTTGGCACTCCGTTTTTCAA CACAGTAAACCATGTTGATGTTCTGATATGTAAGACATTACAACCTATGATATGCTGCTGTACTGAATATGAAGCAGGTAGACTTGGAAGGTTTTTGTAT GAGACATTAAAGATTGCTTACTACTGGAAGAGTGATGAATCTATATATGAACATGAGTGTGGAAATATGCCTGGATTTGCTGTGTATTATAGATTTCCAA ACAGCCAACGGGTTACATATGGTCAATTCATCAAGGTACACTGGAAATGGAGTCAGAGAATGTCTCGGCTATTGATTCAGTGTCTGGAATCATCTGAGTA CATGGAAATTCGAAACGCTCTTATTTTGTTGACAAAAATTTCAGGAGTTTTTCCAGTTACTAAAAGGAGTGGTATTAACCTTGAAAAACGAGTAACTAGA ATCAAAAGTGATGAAAGGGAGGATCTCAAAGTTTTGGCAACAGGTGTTGCTGCAGCTTTGGCTGCTAGAAAGCCTTCGTGGATTACAGATGAAGAATTTG GCATGGGATATCTTGAAATAAAGCCTCCATCTGCTGCATCAAAATCTTTATCTGGAAATGCAGCTGCAGCACAAAATAGTTCTGCTCTTAATGTTTCTCA AGGTGAACCTGCTGAGGGAAGAGCACCTCACACTGGAAGCCAACATGGAGATCCTGGGAATTCAACCAGAGAGCAGATATCCAGGGCAAAACATGCTGAT GGGAGGTCAGATAGAACAGACAATGTCTCACATTCGAAATTTGATCAAGGGCATCAAAAATCCAAAGGTGGTTCATCAACCAATGGGTCAAATGCCCAGT CAGCTGGTTCTGCAGCTGCTGTTCATGTAGGAGCATCAAGATCAGAAAATCGAAAGGGGGTGGATGATTCATCAAATAGAACATTGGAGGATGGCACTGT CAGAGCTGCTCCAAAGAACTTAGCGGAGTCTGAGATGAAAATTTCCACAAAGCGGCTGGTTTCCAAAACACCAAAGCAAGATGTTGTAAAAGATGATAAT AAATCTGGAAAAGCTGTTGGCCGAACTCCATCCTCATCCACAAGTGACAAAGACATCCAGGTTCATTTATCAGAGGGCAGGCAAGGGGGTGCTGCTAATG TTTCTTCTGCACTCACATTGAATGGTAATGCAGTTTCAACATCCGGAAAAATATCTACCCTGTCTACAAGAGCATCTGATTCTTATGGTGCTGAATCAAA GTCAGATAGTGGACTTAACAAACCTATGCCAAAAGCTGAAGCAACTGAAGTTGCTGATGTGCAGAAGCCACCTCAACTTGTTCATTCTCCTAGGCATGAT AACTCTGTTGCTGCTTCAAAGTCCAGTGATAAGTTGCAAAAAAGAGCGAGTCCTGCTGAAGAACCTGACAGATCAAGTAAACGGCGAAAAGGGGATGGTG AATTGAGAGATTTAGAGGGTGAAGTTAAATTCTCTGAAAGAGAGAGGTCTACAGATACTCGATCTGCGGATCTTGATAAAGTGGGAAATGATGAACAGAA TAAGCATAGGAGTACGGATAAACCTTTGGATAGGTCAAAAGATAAAGGTAATGATAGATATGATAGGGATCATCGGGAAAGATCGGAGCGTCCTGATAAA TCCCATGGGGATGATAGTTTAGCTGACAGATCGAGAGACAAATCAATGGAAAGATATGGAAGAGAGCGTTCGGATGAGAGAGGGATGGATAGGGGTACTG ATAGGAGTTTCGATAGACTAGCTGACAAAGCCAAAGATGACAGAAGCAAGTTACGGTACAATGATACATCTGCTGAAAAATCTCAGGGTGATGATCGTTT TCATGGGCAAAACTTGCCTCCACCACCACCTTTACCTCCTCACATGGTTCCCCAGTCAGTTACTTCTGGTAGAAGAGATGAAGATGCTGACCGAAGGTTT GGAACTACCAGACATGCCCAGAGGCTTTCTCCTAGGCATGACGAGAAAGAACGAAGACGATCAGAAGAAAATTCCTTGGTTTCACAAGATGATACAAAAC GAAGAAAAGAAGATGATGTTCGTGAGAGAAAGCGAGAAGAGCGAGAGGGGTTGTCAATTAAGGTGGAAGAGAGGGAAAGAGAAAGGGAGAGGGAGAAAAC CCATCTCTTGAAGGAGGAAATGGATGCTGGTGCAGCTGCTAAGAGACGGAAAATTAAAAGAGATCATCTGCCAACTGGGGAAGCTGGTGAATATTCTCCT GTTGCCCCACCACCTCCTCCCCTTGGTAGTGGCATGTCACAATCATATGATGGTAGGGATAGGGGAGATCGGAAGGGGGGCACGATTCAGCGTACAAGTT ACTTGGAGGAACCTTCCATAAGGATTCATGGTAAAGACGTAGCTGGCAAGATGGCTCGTCGTGATGCTGATCCAATGTATGACCGGGAATGGGATGAGGA CAAGAGGCAGAGAGCTGAACAAAAGCGGAGGCACCGCAAGTAG
AA sequence Show only first row Show all	>Potri.019G054600.1 pacid=42774394 polypeptide=Potri.019G054600.1.p locus=Potri.019G054600 ID=Potri.019G054600.1.v4.1 annot-version=v4.1 MSTTLPPMECLYVTEEFLRELKGGNHSFRLPHPVPILRFLYELSWNLVRGELPFQKCKAALDSVEFVDKVSAVGLGSNFADIITQMAQDLTMSGEYRSRL IKLAKWLVESALVPLRFFQERCEEEFLWEAEMIKIKAQDLKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLYQGSEDTTENTSAATIGIIKSLIGH FDLDPNRVFDIVLEYFELQPDSNVFLELIPIFPKSHASQILGFKFQYYQRIELNSHVPFGLYKLTALLVKEEFIDLDSICAHLLPKDDEAFEHYNTFSSK RLDEANKIGKINLAATGKDLMDDEKQGDVTVDLFAALDMEAEAVAERFSELENNQTLGLLTGFLSVDDWYHAHVLFERLSPLNPVAHTQICNGLFRLIEK LVSSAYNIIRQTHIQSCGSPRIAGIDAMGVTSSSGHVSFIDLPKEFFQMLVTVGPYLYRDTLLLHKVCRVLRGYYMSALELVDSGDGALNGELLIPGNRV PRLHLREARSRVEEALGACLLPSLQLVPANPAVGQEIWEVMSLLPYEVRYRLYGEWEKDDERNPVILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLA HANPMTVLRTIVHQIESYRDMISPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLGNQLKKG QGIELVLLQELLQQMANVQYTENLTEEQLDAMAGSETLRYQATSFGVTRTNKALFKSANRLRDSLLPKDEPKPAIPLLLLIAQHRSVVVINADAPYIKMV SEQFDRCHGTLLQYVEFLCSAVTPPSAYAQLIPSLDDLVHLYHLDPEVAFLIYRPVMRLFKCAGSLDVFWPLENNKTVTNTSAILEPEAIECSGGVILDL GSSHKSVTWSDLLETVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEIAKQHAALKALEELSDNSSSAITKRKKEKERIQESLDRLTSELRKH EDNVSSVRRRLSCEKDKWLTSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHVDVLICKTLQPMICCCTEYEAGRLGRFLY ETLKIAYYWKSDESIYEHECGNMPGFAVYYRFPNSQRVTYGQFIKVHWKWSQRMSRLLIQCLESSEYMEIRNALILLTKISGVFPVTKRSGINLEKRVTR IKSDEREDLKVLATGVAAALAARKPSWITDEEFGMGYLEIKPPSAASKSLSGNAAAAQNSSALNVSQGEPAEGRAPHTGSQHGDPGNSTREQISRAKHAD GRSDRTDNVSHSKFDQGHQKSKGGSSTNGSNAQSAGSAAAVHVGASRSENRKGVDDSSNRTLEDGTVRAAPKNLAESEMKISTKRLVSKTPKQDVVKDDN KSGKAVGRTPSSSTSDKDIQVHLSEGRQGGAANVSSALTLNGNAVSTSGKISTLSTRASDSYGAESKSDSGLNKPMPKAEATEVADVQKPPQLVHSPRHD NSVAASKSSDKLQKRASPAEEPDRSSKRRKGDGELRDLEGEVKFSERERSTDTRSADLDKVGNDEQNKHRSTDKPLDRSKDKGNDRYDRDHRERSERPDK SHGDDSLADRSRDKSMERYGRERSDERGMDRGTDRSFDRLADKAKDDRSKLRYNDTSAEKSQGDDRFHGQNLPPPPPLPPHMVPQSVTSGRRDEDADRRF GTTRHAQRLSPRHDEKERRRSEENSLVSQDDTKRRKEDDVRERKREEREGLSIKVEEREREREREKTHLLKEEMDAGAAAKRRKIKRDHLPTGEAGEYSP VAPPPPPLGSGMSQSYDGRDRGDRKGGTIQRTSYLEEPSIRIHGKDVAGKMARRDADPMYDREWDEDKRQRAEQKRRHRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	0	1
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Potri.008G080900 [exp]	1.41	0.9146
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	1.41	0.9088
AT2G47410			WD40/YVTN repeat-like-containi...		Potri.014G121100 [exp]	2.82	0.8689
AT3G04160			unknown protein		Potri.019G029400 [exp]	3.87	0.8641
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Potri.015G050800 [exp]	5.29	0.8549
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Potri.002G201400 [exp]	5.65	0.8403
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	5.74	0.8762
AT2G29210			splicing factor PWI domain-con...		Potri.009G036900 [exp]	5.83	0.8397
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Potri.006G116000 [exp]	8.12	0.8491
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.018G047500 [exp]	8.83	0.8456

Compare expression of checked genes

Potri.019G054600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.