Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02740 572 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G05840 567 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G36260 548 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G65240 531 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G22850 328 / 2e-107 Eukaryotic aspartyl protease family protein (.1) AT2G36670 320 / 3e-104 Eukaryotic aspartyl protease family protein (.1.2) AT1G08210 301 / 5e-97 Eukaryotic aspartyl protease family protein (.1) AT3G42550 163 / 5e-45 Eukaryotic aspartyl protease family protein (.1) AT4G33490 152 / 3e-41 Eukaryotic aspartyl protease family protein (.1.2) AT5G43100 154 / 2e-40 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146400 [exp] 580 / 0 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 332 / 7e-109 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 327 / 7e-107 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 303 / 1e-97 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 283 / 1e-89 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099200 [exp] 155 / 5e-42 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G020200 [exp] 157 / 8e-42 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 150 / 6e-40 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.007G099301 [exp] 149 / 8e-40 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036430 [exp] 685 / 0 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041103 [exp] 678 / 0 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 674 / 0 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 655 / 0 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 570 / 0 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 311 / 2e-100 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 308 / 1e-99 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 308 / 2e-99 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10005356 [exp] 304 / 9e-98 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035556 [exp] 308 / 1e-93 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.019G054900.1 pacid=42773472 polypeptide=Potri.019G054900.1.p locus=Potri.019G054900 ID=Potri.019G054900.1.v4.1 annot-version=v4.1 ATGGATCTAAGGAGATTGGTGGCGTTGTTAATGGTACTGCTGGTGGTTCAATTGGGTTTGGTTTCTTTCTCATTAGGAAACGTGGTTTTTAAGGTCCAGC ATAAATTTGCCGGCCGTTTACGCAACCTTACTGAATTTAAAGCCCATGATGCTCGCCGTCACAGCCGCCTTCTCTCCTCTGTTGACCTTCCTTTAGGTGG CAATGGTCATCCTGCTGAAACTGGCCTTTACTTCGCGAAGATTGGGCTTGGCAATCCATCAAAGGACTATTATGTTCAAGTGGATACTGGGAGCGATATT CTATGGGTGAATTGCATCGGCTGTGACAAGTGTCCCACAAAAAGTGACCTTGGTATAAAATTGACACTGTATGATCCAGCCAGCTCTGTGTCTGCAACAA GGGTTTCTTGTGATGACGATTTCTGTACTTCCACATACAATGGCTTACTTCCTGATTGCAAAAAAGAATTGCCCTGCCAATACAATGTCGTTTATGGGGA TGGAAGCTCAACTGCTGGATACTTTGTGAGTGACGCGGTGCAGTTCGAGCGAGTCACTGGAAACCTACAAACAGGATTATCAAATGGGACTGTTACATTT GGGTGTGGAGCTCAACAATCTGGGGGATTAGGTACATCAGGTGAAGCACTTGATGGAATACTTGGGTTCGGGCAAGCAAATTCATCTATGATTTCACAAC TTGCTTCAGCTGGAAAAGTTAAAAGAGCTTTTGCGCATTGCCTGGATAATGTAAATGGAGGTGGAATCTTTGCCATTGGGGAATTGGTCTCACCAAAAGT GAATACAACTCCTATGGTACCAAATCAGGCACATTACAATGTTTATATGAAGGAAATTGAGGTGGGTGGTACAGTTCTAGAACTCCCAACAGATGTATTT GATTCCGGAGATCGGAGAGGAACAATAATAGATAGTGGTACTACTTTGGCCTATCTTCCAGAGGTGGTTTATGATTCAATGATGAATGAGATCAGGAGTC AGCAGCCTGGTTTGAGTTTACATACTGTCGAGGAGCAATTTATCTGTTTTAAGTACAGTGGAAATGTTGATGATGGATTTCCAGACATCAAGTTTCACTT CAAAGACTCACTTACTTTGACGGTGTATCCCCATGACTATTTGTTCCAAATTAGTGAAGATATTTGGTGTTTTGGGTGGCAGAACGGTGGGATGCAATCA AAGGATGGGAGGGATATGACTCTTTTAGGAGATTTGGTGCTTTCTAATAAACTTGTATTATATGATATCGAAAATCAGGCCATTGGATGGACAGAGTACA ACTGCTCTTCAAGCATCAAATTGAAGGATGATAAATCTGGATCAGTGTATTCTGTTGGTGCTGAGAATCTTTCGTCGGCATCTCCCGTTCTAAGCGGAAG AATTGTAACGTTTTTGTTATTACTATTTGCTATGCTGCATAGATTTACATGA
AA sequence Show only first row Show all	>Potri.019G054900.1 pacid=42773472 polypeptide=Potri.019G054900.1.p locus=Potri.019G054900 ID=Potri.019G054900.1.v4.1 annot-version=v4.1 MDLRRLVALLMVLLVVQLGLVSFSLGNVVFKVQHKFAGRLRNLTEFKAHDARRHSRLLSSVDLPLGGNGHPAETGLYFAKIGLGNPSKDYYVQVDTGSDI LWVNCIGCDKCPTKSDLGIKLTLYDPASSVSATRVSCDDDFCTSTYNGLLPDCKKELPCQYNVVYGDGSSTAGYFVSDAVQFERVTGNLQTGLSNGTVTF GCGAQQSGGLGTSGEALDGILGFGQANSSMISQLASAGKVKRAFAHCLDNVNGGGIFAIGELVSPKVNTTPMVPNQAHYNVYMKEIEVGGTVLELPTDVF DSGDRRGTIIDSGTTLAYLPEVVYDSMMNEIRSQQPGLSLHTVEEQFICFKYSGNVDDGFPDIKFHFKDSLTLTVYPHDYLFQISEDIWCFGWQNGGMQS KDGRDMTLLGDLVLSNKLVLYDIENQAIGWTEYNCSSSIKLKDDKSGSVYSVGAENLSSASPVLSGRIVTFLLLLFAMLHRFT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02740			Eukaryotic aspartyl protease f...		Potri.019G054900 [exp]	0	1
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Potri.014G129200 [exp]	7.07	0.6855	UXS2.2
AT3G02360			6-phosphogluconate dehydrogena...		Potri.004G108920 [exp]	18.02	0.6815
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.003G081800 [exp]	18.65	0.6827	RAB1.6
AT3G12560		ATTBP2, TRFL9	TELOMERIC DNA-BINDING PROTEIN ...		Potri.010G202400 [exp]	28.35	0.6025
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G217300 [exp]	29.49	0.6917	Pt-CUL1.4
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.008G125900 [exp]	33.67	0.6868
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Potri.007G080100 [exp]	36.26	0.5933
AT1G80630			RNI-like superfamily protein (...		Potri.003G179100 [exp]	50.43	0.6450
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.007G013900 [exp]	53.47	0.6439	GMD1.1
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Potri.006G082500 [exp]	91.20	0.6129

Compare expression of checked genes

Potri.019G054900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.