Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03340 439 / 4e-153 UNE6 unfertilized embryo sac 6, LUC7 related protein (.1) AT5G17440 439 / 5e-153 LUC7 related protein (.1) AT5G51410 82 / 3e-17 LUC7 N_terminus domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G084800 [exp] 497 / 5e-176 AT5G17440 473 / 2e-166 LUC7 related protein (.1) Potri.003G109000 [exp] 71 / 2e-13 AT5G51410 345 / 2e-118 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.001G124300 [exp] 71 / 2e-13 AT5G51410 350 / 2e-120 LUC7 N_terminus domain-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026846 [exp] 468 / 4e-163 AT5G17440 522 / 0.0 LUC7 related protein (.1) Lus10020225 [exp] 463 / 1e-158 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1) Lus10027212 [exp] 76 / 4e-15 AT5G51410 380 / 2e-132 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10038924 [exp] 76 / 7e-15 AT5G51410 382 / 3e-133 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10031156 [exp] 74 / 3e-14 AT5G51410 360 / 1e-124 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10031732 [exp] 71 / 4e-13 AT5G51410 381 / 1e-132 LUC7 N_terminus domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03194 [poplar] [flax] LUC7 LUC7 N_terminus
Representative CDS sequence Show only first row Show all	>Potri.019G055000.6 pacid=42773443 polypeptide=Potri.019G055000.6.p locus=Potri.019G055000 ID=Potri.019G055000.6.v4.1 annot-version=v4.1 ATGGATGCGATGAGGAAACAGCTGGATGTGCTCATGGGAGCAAATCGAAACGGCGACGTGAGAGAGGTCAATCGCAAGTACTACGATCGTGATGTTTGTC GCTTGTACTTGGTTGGCCTTTGCCCTCACGAGCTTTTCCAACTAACGAAAATGGATATGGGACCATGCCCGAAAGTCCATTCACTGCAGCTGAGGAAAGA ATATGAAGAATCGACGGGGAAAGGTGTTGATAACTATGAGATAGAGTTAGAGAATGTTATCGATAAGCTCATTGTCGAATGCGATAAGAAAATCGGTAGA GCACTTAAGCGTCTTGAAGATGAAGACGCCAAGGCTGCTATTGCGATTTCAGTCACTGAGGTTACACAGAATGCTGAGGTAAGTGAGTTATCGAAGCTGA TTAAAGAGAAGCTGAAAGAAGTTGACAAATATGATCTCGAAGGCAAAACAGATTTTAAAATTCAAGTTTTGGAAGAAGTGGAAAAACTTAGAACTGAAAG AGCAGAGAAGCAGTCTGCACTGCTTTTGGAGGCCTTCAATAAAGACAGGGCTTCTTTACCTCAACCCATGCTGACCCCCCCACCACCACCACCACCCATG CCATTACCTACTCCTGATCCTCGCACCCAAGAGATGATAAATGAGAAGCTGAAGAAAGCTGAGGATCTTGGTGAGCAAGGAATGGTAGATGAAGCTCAAA AAGCATTGGAAGAGGCTGAAGCACTTAAGAAGCTTCCAGCCAGGCAGGAACCTTCTGCAGATTCCTCCAAGTATACTGCTGCTGATGTGCGCATTACTGA TCAGAAGCTACGTGTTTGTGACATTTGTGGAGCTTTTCTAAGCGTATATGACAGTGACCGACGTCTTGCAGATCATTTTGGAGGGAAGCTTCATTTAGGC TATATGCAAATTCGTGAGAAACTCACTGAGCTTCAGGAAAACAAGCAACGCAAGGTTGACCGGCACGATGATCAGAGATCGAGAGAACGAAGTAGAGATC GCGATAGAGAACCAAGCAGGGATCGAGATCGGGGAGATAGCCGTGACCGGGGGAGAGAGTATGATCGAAAAAGCAGAGACCGTGACAGGTATAATGACCG GGATCGTGGATATGATCGTGAACGTGACAGAGGTTCAGAGCGCTCCCGCAATTATGATTCAAGAAGTCGTCGCAGATCACGTTCTCGGTCTAGGGAACAT TCTAGGGATTATGATCACCACAGGCGCTTTGATCGGTACTAA
AA sequence Show only first row Show all	>Potri.019G055000.6 pacid=42773443 polypeptide=Potri.019G055000.6.p locus=Potri.019G055000 ID=Potri.019G055000.6.v4.1 annot-version=v4.1 MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEESTGKGVDNYEIELENVIDKLIVECDKKIGR ALKRLEDEDAKAAIAISVTEVTQNAEVSELSKLIKEKLKEVDKYDLEGKTDFKIQVLEEVEKLRTERAEKQSALLLEAFNKDRASLPQPMLTPPPPPPPM PLPTPDPRTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPSADSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLG YMQIREKLTELQENKQRKVDRHDDQRSRERSRDRDREPSRDRDRGDSRDRGREYDRKSRDRDRYNDRDRGYDRERDRGSERSRNYDSRSRRRSRSRSREH SRDYDHHRRFDRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17440			LUC7 related protein (.1)		Potri.019G055000 [exp]	0	1
					Potri.006G023450 [exp]	1.41	0.8378
AT1G14740			Protein of unknown function (D...		Potri.010G102600 [exp]	3.74	0.8064
AT1G49230			RING/U-box superfamily protein...		Potri.019G010500 [exp]	8.48	0.7847
AT4G32290			Core-2/I-branching beta-1,6-N-...		Potri.006G254800 [exp]	10.39	0.7647
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Potri.001G134800 [exp]	15.49	0.7437
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.002G139500 [exp]	18.76	0.8040
AT4G19950			unknown protein		Potri.005G184600 [exp]	19.74	0.6855
AT5G14610			DEAD box RNA helicase family p...		Potri.001G347100 [exp]	22.75	0.7807
AT5G42320			Zn-dependent exopeptidases sup...		Potri.005G250300 [exp]	31.46	0.6702
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.005G180800 [exp]	32.86	0.8000	CHB904,CHB4.1

Compare expression of checked genes

Potri.019G055000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.