Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65270 356 / 3e-124 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026847 [exp] 355 / 2e-123 AT1G65270 362 / 2e-126 unknown protein Lus10020224 [exp] 353 / 7e-123 AT1G65270 358 / 1e-124 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G055100.1 pacid=42773197 polypeptide=Potri.019G055100.1.p locus=Potri.019G055100 ID=Potri.019G055100.1.v4.1 annot-version=v4.1 ATGGAGAAGGCGGCACTGCTACAAGTATTCGCTCTGTTACTTGTAATCTCATCTCTTCACGCATTCCAATCCGATGAACTAGACGAAGAGTTCGGCCTCG AGGGAGGGAATCTTCAACCTCAAGAACGAATCCCTGATCCGGTCGTACCCACCAGATCAACTCCCAACCGAGTGAAGTATTCGGATTCAGATTCGGACTC AAAGATCCAAATAACCCTTGAACACGCCTTTGGCGACTCCGATTTCTTCCCTGCTGCTACCTTCTCAGCGCGCCTCAAAACGTGGAGTCACGGTGCTCAG ACACTAACAAAGCTGCGGTTTTCAAGAAATTCTTTTACGGAGGTGGAGAAACAGAAATTCCAAAAATTGCTGGAAGACGATGAGTTTTACAGGATAAGAT TGCCTTCCAATGTTTTGAACCCTCCTGGAAAGGATTTTGTCATATCATCTGTCAGGGCTAGATGTCTTCCACGGGATGGCTTGGATGAGCACTTTGTTAT ACACACGGAAGGTGTTAATATCTTGGCTGTCAATTATGGTTCCCCTGGGACATGTCCCTACCCACGGCAATTGAAACTTCCTGCAAAGTGGTCATTCAAC TCTCATACGGTTCTGAAGAATAGTGAGCAGGCACCAAGAACTCCAATATTTGCTGAAGATTTGCCAGGAGAACAAGGAGAGGGTGTAGACGTACCGCCAC CAGAAAGGTCCTTTTGGGCTAAATATTGGATGTACTTGATCCCTCTTGGACTCATAGTGATGAATGCCATGACCCAAGCGATGAATTTGCCTGAGGAACA AGCTACTGGCCAATCAGGTGCTCAGCCAGCTGCAGCAATCCAGCGTGGGCCCAATCCTGCTGTGAGAAGACGATGA
AA sequence Show only first row Show all	>Potri.019G055100.1 pacid=42773197 polypeptide=Potri.019G055100.1.p locus=Potri.019G055100 ID=Potri.019G055100.1.v4.1 annot-version=v4.1 MEKAALLQVFALLLVISSLHAFQSDELDEEFGLEGGNLQPQERIPDPVVPTRSTPNRVKYSDSDSDSKIQITLEHAFGDSDFFPAATFSARLKTWSHGAQ TLTKLRFSRNSFTEVEKQKFQKLLEDDEFYRIRLPSNVLNPPGKDFVISSVRARCLPRDGLDEHFVIHTEGVNILAVNYGSPGTCPYPRQLKLPAKWSFN SHTVLKNSEQAPRTPIFAEDLPGEQGEGVDVPPPERSFWAKYWMYLIPLGLIVMNAMTQAMNLPEEQATGQSGAQPAAAIQRGPNPAVRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65270			unknown protein		Potri.019G055100 [exp]	0	1
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	1.00	0.9465	RPT4.1
AT1G09150			pseudouridine synthase and arc...		Potri.005G023600 [exp]	2.44	0.9432
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Potri.001G007800 [exp]	4.47	0.9305	PP2.4
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	6.63	0.9231
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	7.14	0.9370
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	7.74	0.9177
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.015G122400 [exp]	8.36	0.9283
AT1G76400			Ribophorin I (.1)		Potri.002G006600 [exp]	10.95	0.9262
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	11.22	0.9287
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.001G162900 [exp]	12.36	0.9186	Pt-PAE1.1

Compare expression of checked genes

Potri.019G055100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.