Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17010 662 / 0 Major facilitator superfamily protein (.1.2.3.4) AT3G03090 637 / 0 ATVGT1 vacuolar glucose transporter 1 (.1) AT5G59250 509 / 3e-177 Major facilitator superfamily protein (.1) AT3G05150 167 / 6e-46 Major facilitator superfamily protein (.1) AT3G18830 164 / 2e-44 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT5G27360 157 / 2e-42 SFP2 Major facilitator superfamily protein (.1) AT4G36670 157 / 4e-42 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G20780 155 / 3e-41 AtPLT4 Major facilitator superfamily protein (.1) AT5G27350 148 / 4e-39 SFP1 Major facilitator superfamily protein (.1) AT2G16130 143 / 3e-37 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G244100 [exp] 513 / 1e-178 AT5G59250 598 / 0.0 Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 155 / 3e-41 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G152300 [exp] 150 / 2e-39 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.017G032200 [exp] 149 / 2e-39 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.006G158700 [exp] 145 / 6e-38 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.014G136600 [exp] 144 / 2e-37 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.004G151725 [exp] 144 / 2e-37 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 143 / 5e-37 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G027500 [exp] 140 / 3e-36 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009573 [exp] 643 / 0 AT5G17010 691 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Lus10016505 [exp] 498 / 2e-172 AT5G59250 758 / 0.0 Major facilitator superfamily protein (.1) Lus10040772 [exp] 261 / 3e-84 AT5G59250 387 / 4e-133 Major facilitator superfamily protein (.1) Lus10023640 [exp] 164 / 9e-45 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10031637 [exp] 157 / 8e-42 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1) Lus10033702 [exp] 156 / 3e-41 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1) Lus10018581 [exp] 149 / 3e-39 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10041731 [exp] 147 / 1e-38 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10033812 [exp] 145 / 4e-38 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10040482 [exp] 146 / 6e-38 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.019G055600.1 pacid=42774419 polypeptide=Potri.019G055600.1.p locus=Potri.019G055600 ID=Potri.019G055600.1.v4.1 annot-version=v4.1 ATGGCGCCCGATCCTGAACAGCCCACGCTCTCCTCCCTTGGAAAGGTGGGGAAGTCGTCGGGAGAGATTGGTGGTGTAGAAGAGCCTCTTCTTAATGGGG GGATTCACACTTCAGAGAATTACTCTCTTGCTTCTGCAATCTTCCCGTTTCTATTTCCCGCTCTTGGAGGACTGTTATATGGTTATGATATTGGTTCTAC ATCTTGTGCTACAATATCAATAAAGTCAGCCACGTTAAGTGGTATTTCATGGTACAACTTGAATTCTGTGGACATCGGGCTCATTACCAGTGGATCACTA TATGGAGCTTTGATCGGCTCTGTCTTGGCCTTCAATATTGCTGACTTTCTAGGGAGAAGAAGAGAGTTGATTCTGGCTGCTTTCTTATATCTTGTTGGAG CACTTGTGACAGCCCTAGCACCTGCCTTTGCTGTTATGGTGATTGGGCGGTTTGTATTTGGTATTGGAATTGGATTGGCAATGCATGCAGCTCCAATGTA CATTGCTGAGACAGCTCCAAGTCATATACGTGGTCAACTAATCTCTCTGAAAGAGTTCTTCATAGTACTTGGCATGGTTGGAGGTTATGGAATTGGTAGT CTATTAGTTGATACTGTAGCTGGTTGGCGCTATATGTATGTAGCCAGTACACCTTTGGCAGTAATCATGGGAATTGGAATGTGGTGGCTACCAGCATCAC CTAGATGGCTGCTATTACGTGCCATACAAGGAAAAGGCAGTATGCAGGAGTTAAGAGAAACTGCAATATGTTGCTTATGCCGGCTCAGGGGTGAAGCTAT TGGTGACACTGCTCCTGCGAAAGTAGATGAGATTCTTGCTGAACTTGCTGTTGTTGGTGAAGAAAAAGAAGTTACACTAGCAGAAGTTTTCCGAGGAAAA TGCTTGAAAGCCCTCACTATTGGTGCAGGGCTAGTTTTGTTCCAACAAATCACTGGGCAGCCAAGTGTGCTGTATTATGCTGCATCAATTCTTCAGAGTG CAGGATTTTCAGCGGCGTCTGATGCCACACGGGTCTCAATACTTCTTGGTTTATTTAAGTTAATCATGACAGGAACAGCTGTTCTTGTCGTTGATAGACT TGGAAGGCGACCTCTACTACTCGGTGGTGTTTCTGGAATGGTTATATCTTTATTCCTCCTGGGATCATATTACATTTTTCTGGATAATGCACCAGTTGTG GCTGTTGCTGCACTGCTGTTGTATGTTGGATGTTATCAGTTATCCTTTGGTCCTATTGGTTGGCTGATGATTTCAGAGATTTTTCCCCTACGCCTAAGAG GGCGGGGGCTTGGTATAGCAGTGCTTGTGAATTTTGGTGCAAATGCACTTGTGACATTTACATTTTCCCCTTTGAAGGCATTGCTGGGAGCTGGGATTTT ATTCTATGCATTTGGAGTGATAGCTGTGGTGTCTCTCCTTTTTATATTCTTCATCGTGCCAGAGACCAAAGGGCTCACTCTCGAGGAAATCGAGGCCAAA TGTTTGTAG
AA sequence Show only first row Show all	>Potri.019G055600.1 pacid=42774419 polypeptide=Potri.019G055600.1.p locus=Potri.019G055600 ID=Potri.019G055600.1.v4.1 annot-version=v4.1 MAPDPEQPTLSSLGKVGKSSGEIGGVEEPLLNGGIHTSENYSLASAIFPFLFPALGGLLYGYDIGSTSCATISIKSATLSGISWYNLNSVDIGLITSGSL YGALIGSVLAFNIADFLGRRRELILAAFLYLVGALVTALAPAFAVMVIGRFVFGIGIGLAMHAAPMYIAETAPSHIRGQLISLKEFFIVLGMVGGYGIGS LLVDTVAGWRYMYVASTPLAVIMGIGMWWLPASPRWLLLRAIQGKGSMQELRETAICCLCRLRGEAIGDTAPAKVDEILAELAVVGEEKEVTLAEVFRGK CLKALTIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGTAVLVVDRLGRRPLLLGGVSGMVISLFLLGSYYIFLDNAPVV AVAALLLYVGCYQLSFGPIGWLMISEIFPLRLRGRGLGIAVLVNFGANALVTFTFSPLKALLGAGILFYAFGVIAVVSLLFIFFIVPETKGLTLEEIEAK CL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17010			Major facilitator superfamily ...		Potri.019G055600 [exp]	0	1
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.004G160300 [exp]	3.00	0.7069	RD19.3
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.001G356900 [exp]	3.46	0.6941	SOYAP4.1
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Potri.017G139700 [exp]	5.47	0.7092
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.012G080100 [exp]	24.73	0.6430
AT3G08650			ZIP metal ion transporter fami...		Potri.006G111200 [exp]	29.89	0.6880
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	35.41	0.6215
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Potri.006G145200 [exp]	35.49	0.6388
AT2G33390			unknown protein		Potri.010G067200 [exp]	37.94	0.6917
AT2G26850			F-box family protein (.1)		Potri.001G273900 [exp]	41.49	0.6812
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.009G086300 [exp]	43.08	0.5401

Compare expression of checked genes

Potri.019G055600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.