Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40460 874 / 0 Major facilitator superfamily protein (.1) AT5G46050 547 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 542 / 0 Major facilitator superfamily protein (.1) AT5G01180 508 / 3e-175 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54140 493 / 4e-169 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 481 / 3e-164 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 466 / 1e-158 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 426 / 2e-143 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G53960 422 / 4e-141 Major facilitator superfamily protein (.1) AT2G37900 417 / 1e-139 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258900 [exp] 622 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 617 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 613 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 596 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G100200 [exp] 496 / 3e-170 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 486 / 2e-166 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 478 / 4e-163 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.006G096800 [exp] 476 / 7e-163 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 473 / 1e-161 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034206 [exp] 828 / 0 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10029063 [exp] 621 / 0 AT2G40460 589 / 0.0 Major facilitator superfamily protein (.1) Lus10011786 [exp] 614 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 611 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 597 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 596 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 589 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 581 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 516 / 3e-178 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10030947 [exp] 483 / 9e-165 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.019G055800.1 pacid=42773170 polypeptide=Potri.019G055800.1.p locus=Potri.019G055800 ID=Potri.019G055800.1.v4.1 annot-version=v4.1 ATGGATACCAAATGCTGCACCCAAGATGGCACTGTAGATCTCCGTGGGCGTCCTGTCCAAGCCTCCAGAACTGGGAAATGGAAAGCGTGTGCTTTTCTGG TTGGCTATGAGGCATTTGAAAGGATGGCTTTCTATGGAGTGGCTTCAAACTTGGTGAATTACCTGACCACCCAACTCCATGAAGAGACGGTTGCATCGGT GAGGAATGTGAATAACTGGTCAGGAGCAGTGTGGATCACACCAATACTCGGCGCCTACATAGCAGATACTTACCTGGGTCGATACTGGACGTTCACTGTG TCATCTCTTATCTATGCAATGGGAATGATACTACTAACAATGGCAGTTTCATTCAAGTTCATGAAACCAGCATGCACAAATGGAGTCTGCAATAAGGCCT CCCCTTCGCAAATCGCATTCTTTTACTCTGCTCTCTACATCATAGCAATAGGGGCAGGAGGGACGAAGCCCAACATATCAACTTTTGGTGCAGACCAGTT CGATGATTATAACCCGCAAGAAAAGAAGCTCAAGGTCTCATTCTTTAACTGGTGGATGTTCAGCTCTTTTGTGGGAGCTCTGTTTGCCACTCTCTGCCTT GTGTACATTCAAGAGAACTTGGGTTGGGGTTTAGGGTATGGTATCCCTGCAGTTGGTCTTTTATTATCCCTGTTTATATTCTATCTAGGGACACCAATTT ACAGGCATAAAGTTAGAAAGACTAAGAGCCCTGCAAGGGAGCTATTTCAAGTCCTCATTGCTGCCTTTAACAACAGGAAACTTCAGCTCCCTAACAGTCC CTCGGAGCTTCAGGAGTTTGACCTGCAATATTACATTCAAACCGGAAAACGGCAGGTCCACCACACACCAGTGTTGAGGTGCTTGGACAAAGCTGCGATC AAAGATGGCAGCAATAATGCAGATACCTCAAACCCATCATCATCGTCATGCACAGTGACGCAGGTAGAAGGAGTCAAGCTCGTTTTTGGAATGATGCTGA TATGGCTGGTGACATTAATCCCTAGTACCATATGGGCACAGATCAACACTTTATTTGTGAAACAAGGGACAACGTTGGACCGCAACTTGGGCCCAAACTT CCAAATTCCAGCAGCTTCACTCGGTAGCTTTGTGACGTTTTCAATGCTTCTCTCCGTGCCAATGTATGACCGTTTCTTTGTACCATTCATGCGTAAGAAG ACCGGAAACCCAAGGGGAATCACGTTACTTCAGAGGCTGGGCATCGGATTCGCCATTCAAGTGATTGCCATTGCAATCGCTTACGCTGTTGAAGTTCGAA GAATGCACGTCATAAGAATGCACCACGTTGTTGGGCCAAAGGAAATCGTCCCCATGAGTATATTTTGGCTGTTGCCTCAGTATGTTCTGCTGGGAATCGC TGATGTTTTTAATGCTATCGGATTGCTGGAATTTTTCTACGATCAATCTCCTGAAGACATGCAAAGCCTAGGAACCACATTCTTCACTAGTGGGATCGGT GTCGGCAACTTCTTGAATAGCTTTCTAGTAACAATGGTTGCCAAGATTACAGGGACCGGAGGAGGCAAGAGTTGGATCGGCAACAACTTGAATGACTCCC ACTTGGATTATTACTACGGGTTCCTCTTAGTTATATCTGCCCTTAATTTAGGGGTCTTCTTGTGGGCATCAAGTAGATATGTTTACAAGAAGGAAACCCT ACAAGCACTGAACGAGGATTGTATCCGAATCGACGGCAAAACCATGGACACGTCTCCTCTAGGGTTGCAAGTATAA
AA sequence Show only first row Show all	>Potri.019G055800.1 pacid=42773170 polypeptide=Potri.019G055800.1.p locus=Potri.019G055800 ID=Potri.019G055800.1.v4.1 annot-version=v4.1 MDTKCCTQDGTVDLRGRPVQASRTGKWKACAFLVGYEAFERMAFYGVASNLVNYLTTQLHEETVASVRNVNNWSGAVWITPILGAYIADTYLGRYWTFTV SSLIYAMGMILLTMAVSFKFMKPACTNGVCNKASPSQIAFFYSALYIIAIGAGGTKPNISTFGADQFDDYNPQEKKLKVSFFNWWMFSSFVGALFATLCL VYIQENLGWGLGYGIPAVGLLLSLFIFYLGTPIYRHKVRKTKSPARELFQVLIAAFNNRKLQLPNSPSELQEFDLQYYIQTGKRQVHHTPVLRCLDKAAI KDGSNNADTSNPSSSSCTVTQVEGVKLVFGMMLIWLVTLIPSTIWAQINTLFVKQGTTLDRNLGPNFQIPAASLGSFVTFSMLLSVPMYDRFFVPFMRKK TGNPRGITLLQRLGIGFAIQVIAIAIAYAVEVRRMHVIRMHHVVGPKEIVPMSIFWLLPQYVLLGIADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIG VGNFLNSFLVTMVAKITGTGGGKSWIGNNLNDSHLDYYYGFLLVISALNLGVFLWASSRYVYKKETLQALNEDCIRIDGKTMDTSPLGLQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40460			Major facilitator superfamily ...		Potri.019G055800 [exp]	0	1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.006G221200 [exp]	1.41	0.8820
AT5G19640			Major facilitator superfamily ...		Potri.001G013400 [exp]	1.73	0.8731
AT2G37900			Major facilitator superfamily ...		Potri.006G092000 [exp]	4.00	0.8419
AT3G11760			unknown protein		Potri.010G244100 [exp]	6.32	0.8288
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G085000 [exp]	6.48	0.8311
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038200 [exp]	7.07	0.8356
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003000 [exp]	7.34	0.8312
AT5G20260			Exostosin family protein (.1)		Potri.006G064850 [exp]	9.79	0.7874
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Potri.018G090300 [exp]	10.77	0.7527	Pt-VHA2.2
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.005G208500 [exp]	11.00	0.8164

Compare expression of checked genes

Potri.019G055800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.