Plant FIBer expression Database

Potri.019G056200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40550 714 / 0 ETG1 E2F target gene 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030540
[exp]
773 / 0 AT2G40550 645 / 0.0 E2F target gene 1 (.1)
Lus10012889
[exp]
736 / 0 AT2G40550 619 / 0.0 E2F target gene 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09739 MCM_bind Mini-chromosome maintenance replisome factor
Representative CDS sequence
>Potri.019G056200.3 pacid=42773345 polypeptide=Potri.019G056200.3.p locus=Potri.019G056200 ID=Potri.019G056200.3.v4.1 annot-version=v4.1
ATGGTGGGACCGATGTACGATTTCGTCGCAAACCCTCTCGGAGCCGTCCGATTAACATTTGACAAGACAATCGGGTCCGCAACGGACCCGTCCTCCTTCG
ACGGCAAAGATTGGGGCGCCGTCGACCTCTTCCGCCACTTCCTCTTCGACCAAGCCCGCCTTTCCCAGGTTCCAATTCTTAATGGTGCAACAATAAATTG
GATTAAACCGAACACTCTTGTTCGGTTTCGGGGAATGATACAAGACATGTTGGGAAATGAATTATATGTTGGTGCTTATAAGGATGGCTCAGTTTGGAGG
ACTAACAAATTCATGGATATCTCTCAATGCCCCGTGGAACTTAATTCGCCTGATATGCGTCTCTGGGAGCGTCGTTTATTGTACTGTGTTCCGGTTCCGG
GATTAAATTCGTGGGCTGAATCTACTTCTGAGGTAGCGGTAAATATGTGCATGGATTCGACTTCTGAACAAAGAGATAAGCGTAGGAGAATGGACATTGA
AGCTGTGGATCACAATGATTTTCCTGTCTCAGGTGATGAATCTGAAGATTCTCCTAGTGCGAAAAGGATGAGAGAGGATCCCTCATCTTCACAGTACCTG
GATCCTAAAAATGAAGGGCCTTGTTCAAGCCATGTTATTCTCCCAGACGTTGATAGAGATTCTCTTCCTTGTCTAGTAAAGATATATGATTCTCCAGAGT
CTGAGTTGAAGCTAAATGATGTTTTTGAATTTGTCGGGGTCCTCACTTTTGATTCTGAGCTTCCATCAGAGAAGGTTGATCAGGATGAGTTCTCTAATGG
TCTTTGTGATGACGTGTCTGTCAATTTGCCACCCAACAAGGTGCCACGCCTCCATTGCGTTATTCATAGGAAACTCACAGTCTATGACTTTCTGCAGAAC
TCCCCTCCAACAGAGCCAAAACCCCATTTAGTCAAAGAGGCAAGGGAAGCACTGTTAAGGCATCTCACATCTATTCTTGGCAATGATGGGGTAGCAGCTC
ATTTCATGTTGTTGCATCTTCTGTCTAGGGTACATGCCAGAGCTGATAATGTTGCTGTTGGGAAGCTTTCTTTGAACCTTACTTGTATTAGCAAAGAGAT
CGCATCTGTATTTGGCACTAAACTAAGTATTGTCATCAAGAATCTTCTTCCCTTCACAAAATGCATACCCCTGACTGTGGAATATCTCAACACGGCTTCT
CTTGCTCCCAAAAAGGATTATCAAATAAATAGACTGATACCTGGAGTTCTACAGCTAGCTGAGGGCTCACACTTAATTTTTGATGAGACATGTTTGGAAA
CAGGAACCCTCAATTCTGCTGGGGTTGAGAACGCAAGGCTGCTAAAAGCCCTGACAGAGTTGCAAAAGGTTGAGTATGATTTTAAGTATTACAAGATGGA
GATGATGGCTGATGTCCAAATGCTAATATTGTCAGAGGGGAAATCAAACATCATGCCAGCTGATATAATTATGCCATTCCAGCCTTCTTCGGCAGGTTCC
TCAGATGTTGTGCCTGCAGAAGTCCTGGAAGTTTGGAGATGGTACTTGGCTACTGTTAGATCAATGCCTCATTTGATCGAGGCAGAAATGCAGAAGGTGG
TAGAAAATGACTTGGTTACTGCTAGGCAAACGGATCGAAGCTTAGGCAGCCAAGACTTCAGCAGATGGCTGACAATGGGCCGCCTCATTTCTGCCAGTTT
TGGCGAGACCTCACTCTCATTGGAGCACTGGCAAATGGTAAAGGAGCTGGAGAGGCTAAGGATGGATAGACTCAAGTGA
AA sequence
>Potri.019G056200.3 pacid=42773345 polypeptide=Potri.019G056200.3.p locus=Potri.019G056200 ID=Potri.019G056200.3.v4.1 annot-version=v4.1
MVGPMYDFVANPLGAVRLTFDKTIGSATDPSSFDGKDWGAVDLFRHFLFDQARLSQVPILNGATINWIKPNTLVRFRGMIQDMLGNELYVGAYKDGSVWR
TNKFMDISQCPVELNSPDMRLWERRLLYCVPVPGLNSWAESTSEVAVNMCMDSTSEQRDKRRRMDIEAVDHNDFPVSGDESEDSPSAKRMREDPSSSQYL
DPKNEGPCSSHVILPDVDRDSLPCLVKIYDSPESELKLNDVFEFVGVLTFDSELPSEKVDQDEFSNGLCDDVSVNLPPNKVPRLHCVIHRKLTVYDFLQN
SPPTEPKPHLVKEAREALLRHLTSILGNDGVAAHFMLLHLLSRVHARADNVAVGKLSLNLTCISKEIASVFGTKLSIVIKNLLPFTKCIPLTVEYLNTAS
LAPKKDYQINRLIPGVLQLAEGSHLIFDETCLETGTLNSAGVENARLLKALTELQKVEYDFKYYKMEMMADVQMLILSEGKSNIMPADIIMPFQPSSAGS
SDVVPAEVLEVWRWYLATVRSMPHLIEAEMQKVVENDLVTARQTDRSLGSQDFSRWLTMGRLISASFGETSLSLEHWQMVKELERLRMDRLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G40550 ETG1 E2F target gene 1 (.1) Potri.019G056200
[exp]
0 1
AT3G54750 unknown protein Potri.006G199200
[exp]
5.65 0.8708
AT5G08020 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA... Potri.015G057300
[exp]
7.34 0.8709
AT2G24490 ATRPA32A, RPA2,... SUPPRESSOR OF ROS1, replicon p... Potri.006G275700
[exp]
7.41 0.8493
AT3G56870 unknown protein Potri.014G181200
[exp]
7.93 0.8618
AT1G47230 CYCA3;4 CYCLIN A3;4 (.1.2) Potri.002G121500
[exp]
8.48 0.8621 CYCA3.1
AT1G67320 EMB2813 EMBRYO DEFECTIVE 2813, DNA pri... Potri.003G169300
[exp]
8.83 0.8412
AT4G30860 SDG4, ASHR3 ASH1-related 3, SET domain gro... Potri.018G102100
[exp]
8.94 0.8601
AT5G49160 MET2, DMT1, DMT... METHYLTRANSFERASE I, METHYLTRA... Potri.004G134000
[exp]
9.16 0.8704 DMT901,Pt-MET1.2
AT4G21070 ATBRCA1 ARABIDOPSIS THALIANA BREAST CA... Potri.001G358100
[exp]
10.95 0.8538 Pt-ATBRCA1.1
AT5G43530 Helicase protein with RING/U-b... Potri.003G083400
[exp]
13.07 0.8554

Potri.019G056200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.