Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56310 681 / 0 Melibiase family protein (.1.2) AT5G08370 493 / 1e-174 ATAGAL2 alpha-galactosidase 2 (.1.2) AT5G08380 468 / 2e-164 ATAGAL1 alpha-galactosidase 1 (.1) AT3G26380 96 / 4e-21 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152200 [exp] 493 / 2e-173 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 489 / 2e-172 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 465 / 9e-163 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.004G038100 [exp] 462 / 6e-162 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.008G185300 [exp] 87 / 3e-18 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 84 / 4e-17 AT3G26380 815 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 82 / 2e-16 AT3G26380 772 / 0.0 Melibiase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029046 [exp] 687 / 0 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10034218 [exp] 683 / 0 AT3G56310 646 / 0.0 Melibiase family protein (.1.2) Lus10024401 [exp] 482 / 2e-169 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 467 / 5e-164 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 466 / 9e-164 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 465 / 6e-163 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 439 / 8e-153 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 438 / 1e-152 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10010160 [exp] 420 / 4e-145 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10017365 [exp] 371 / 7e-126 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF16499 [poplar] [flax] Melibiase_2 Alpha galactosidase A
Representative CDS sequence Show only first row Show all	>Potri.019G056700.1 pacid=42774031 polypeptide=Potri.019G056700.1.p locus=Potri.019G056700 ID=Potri.019G056700.1.v4.1 annot-version=v4.1 ATGAGATTAATGGGAAAGAAAATTACTTGTTACTTTGAATTGTTTCTATTAGGTTCAAGTTTATCATGGGTACTTAAGGTGGCATTTGCAGGCAGCATAG CGCCTCTTTTGCAGGGATATGAGGAAGGGAGTTATGGGTATAGCAGATCATTCAATAACGTTTTTTCTACTTCAAATTATGGGATTTTCCAGCTCAATAA TGGATTGGCTAGAACTCCTCAGATGGGATGGAATAGCTGGAATTTCTTTGCCTGCAATATCAATGAAACCGTCATCAAGGAAACAGCTGATGCACTTATT TCAACCGGCTTGGCTGAGTTGGGTTATGTGTATGTCAACATAGATGATTGCTGGTCTTCCACAAAACGAGATTCAAAGGGTCAACTGATCCCTGATCCAA AAACCTTTCCATCGGGAATTAAAGCTCTTGCTGATTATGTTCATGAGAAGGGCCTCAAGCTTGGCATTTATTCTGATGCTGGGGCTTTTACATGTCAAGT TCGACCGGGATCGCTTCTCCATGAAAAAGATGATGCAGAACTTTTTGCTTCTTGGGGTGTAGATTATTTGAAGTATGACAACTGTTTCAATTTGGGCATC AATCCAAAAGAAAGATATCCACCTATGCGTGATGCTCTAAACTCAACTGGACGCACAGTTTTTTATTCACTTTGTGAATGGGGAGTAGATGACCCTGCAT TATGGGCTGGTAAAGTTGGAAATAGTTGGCGTACAACAGATGACATCAATGATTCATGGGCAAGCATGACTACCACAGCCGATCTGAATGATAAATGGGC ATCCTATGCTGGACCTGGTGGATGGAATGATCCTGATATGTTGGAAGTTGGCAATGGTGGTATGACTTACCATGAGTATCGTGCTCATTTCAGCATCTGG GCCTTAATGAAGGCCCCCCTTTTGATTGGTTGTGATGTAAGAAACATGACTGCAGAAACTATTGAAATTCTAACCAACAAGGAGATCATTGCTGTAAATC AAGATCCGCTAGGGATTCAGGGAAGGAAGGTTTATTCTACCGGAACTGATGGTTGCCTACAGGTCTGGGCAGGTCCTTTGTCTGGCCATCGCATAGTTGT TGCTCTCTGGAATCGATGTTCAAAAGCTGCAACTATCACCGCTGGATGGGGTGCACTTGGGCTCGAATCCAGCACTAGTGTCAGTGTAAGAGACCTGTGG CAGGGCAAAGATATCGTGGGAGATGCAGTGGCGTCATTTGGTGCCCGAGTCGATGCTCATGATTGCCTAATATTTATTTTTACTCCGCATTCAGTGTACC ACTCTGAAAATTAG
AA sequence Show only first row Show all	>Potri.019G056700.1 pacid=42774031 polypeptide=Potri.019G056700.1.p locus=Potri.019G056700 ID=Potri.019G056700.1.v4.1 annot-version=v4.1 MRLMGKKITCYFELFLLGSSLSWVLKVAFAGSIAPLLQGYEEGSYGYSRSFNNVFSTSNYGIFQLNNGLARTPQMGWNSWNFFACNINETVIKETADALI STGLAELGYVYVNIDDCWSSTKRDSKGQLIPDPKTFPSGIKALADYVHEKGLKLGIYSDAGAFTCQVRPGSLLHEKDDAELFASWGVDYLKYDNCFNLGI NPKERYPPMRDALNSTGRTVFYSLCEWGVDDPALWAGKVGNSWRTTDDINDSWASMTTTADLNDKWASYAGPGGWNDPDMLEVGNGGMTYHEYRAHFSIW ALMKAPLLIGCDVRNMTAETIEILTNKEIIAVNQDPLGIQGRKVYSTGTDGCLQVWAGPLSGHRIVVALWNRCSKAATITAGWGALGLESSTSVSVRDLW QGKDIVGDAVASFGARVDAHDCLIFIFTPHSVYHSEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56310			Melibiase family protein (.1.2...		Potri.019G056700 [exp]	0	1
AT3G01170			Ribosomal protein L34e superfa...		Potri.017G084500 [exp]	3.31	0.8358
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.019G010200 [exp]	4.00	0.8344
AT2G41640			Glycosyltransferase family 61 ...		Potri.006G048500 [exp]	4.47	0.8096
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.015G121000 [exp]	7.07	0.8040
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.006G061500 [exp]	10.09	0.8224
AT1G12450			SNARE associated Golgi protein...		Potri.003G117400 [exp]	12.72	0.7840
AT1G73760			RING/U-box superfamily protein...		Potri.015G043900 [exp]	13.26	0.7581
AT5G39360		EDL2	EID1-like 2 (.1)		Potri.004G125000 [exp]	13.78	0.7838
AT2G30105			unknown protein		Potri.001G280500 [exp]	14.96	0.7400
AT3G09970			Calcineurin-like metallo-phosp...		Potri.002G156200 [exp]	17.32	0.7983

Compare expression of checked genes

Potri.019G056700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.