Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56320 534 / 0 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 455 / 5e-154 Nucleotidyltransferase family protein (.1.2.3.4) AT3G51620 408 / 2e-131 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G61690 352 / 7e-107 nucleotidyltransferases (.1) AT5G53770 56 / 5e-08 Nucleotidyltransferase family protein (.1) AT2G39740 53 / 6e-07 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G128800 [exp] 405 / 9e-131 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.013G154900 [exp] 402 / 2e-129 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.015G020400 [exp] 394 / 8e-122 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 389 / 6e-120 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 371 / 2e-113 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 370 / 3e-113 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.011G116501 [exp] 62 / 2e-11 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1) Potri.001G400800 [exp] 44 / 0.0002 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034219 [exp] 539 / 0 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10029045 [exp] 530 / 0 AT3G56320 456 / 1e-153 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10030537 [exp] 523 / 2e-178 AT3G56320 445 / 3e-149 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10022746 [exp] 413 / 1e-134 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 405 / 1e-130 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 405 / 1e-130 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 372 / 6e-121 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10012885 [exp] 367 / 8e-119 AT3G51620 297 / 5e-93 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10042221 [exp] 362 / 1e-115 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10004018 [exp] 366 / 1e-111 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF01909 [poplar] [flax] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.019G056800.1 pacid=42774567 polypeptide=Potri.019G056800.1.p locus=Potri.019G056800 ID=Potri.019G056800.1.v4.1 annot-version=v4.1 ATGGGAAATCTTCAAAGGAGTTTGTCACCTTCCTCCCTTTCCACCTCTTCCTCCTCTTCACATGGTCCACACCCATTGCAAATTGATCCAGAACTCTGGC TAATGGCTGAAAAAAGGACCCAAGAGATACTATATACCATTCAACCTACTTTTGCTTCTGAGCATAAAAGGATGGAAGTCATCGATTATATTCAGAGTTT AATTAAATATTATTTTACAGTTGAGGTCTTTGCATTTGGTTCGGTCCCTCTGAAAACCTATCTTCCAGATGGAGATATTGATCTGATGGTCCTCAGTCAC CAAAACATGGAGGAAGAATTAGCCAGGGGTGTCTGCACTCTCCTCCAACGTGAAGAGCTTGACCCTGAATTCCAAGTAAATGATGTCCAATATATTCACG CTCAGGTTAAGCTTGTAAAGTGTTCTGTGAAGAATATCTCCGTTGACATCTCTTTCAATCAAATGGCAGGGCCCTCTGCTCTATGTTTTTTAGAGCAGGT TGATCAACTTATTGGGCAAGATCATCTTTTCAAACGCAGCATTATCTTGATCAAAGCATGGTGTTTCTATGAGAGCCGAATTCTTGGTGCACACCATGGC TTGATCTCGACATATGCATTACAAATCTTGGTTTTGAATATCATTAATGTTTTCCATTCATCTCTACCTGATCCTTTAGCGGTCCTCTACAAATTTTTGG ATTATTATAGCGCCTTTGATTGGGACAATTATTGTGTCAGTATAAATGGCCCCATTCCCATATCATCCTTCCCACAAACTGATTCAACACATAACAATGG GAACGAGTCACTTATCAGTCAGGAGTTTCTGAGGAACTTTAGAGACAAGTTCGCATTTCTGATGAAAGAACTTGAGAATGGTGCCCATGAATTTCCCATT AAGCATCTCAACATAGTGGATCCTCTTAAGAGCAGCAACAACTTAGGACGTAGTGTTAACAAAGGAAATTTTCATCGAATAAGAGGTGCCCTTTCTTATG GAGCTCAAAGGCTTGGAGAAATAATTGCGTTACCAGGAGAAGCAATGGGTGGTAGACTTGAGAAGTTCTTTATGAACACTTTGGACAGAAATGGTAGGGG TCAAAGGCCTGATGCTGATGTTCCTGTCCCTGCATTTGGTACTGGAAGATCGGAGGCGTCTGATCTCAATGGAGACTATGACAAGTATTACAGTGGTCTC CTACATGGCCAGTGGTATCACAGTTATGCATTGCCTGTACCTCCTCAGCCCAGTTCGCCATCATCACCTTCACAAATCAAGCAGAAAAGTGCTAGGGATG TGCTGCCTCAGTTGCTGCAAAGCAAGCAGGATATTCTTTCTCAAAGAGGCACAGAGGTGTTCTTCCCAAGGCAAAAATGTCACCCTTATGCTTCACAAGT CCATGTGGCTATTTCTGGTATTGATACAATGAGGAAGTCAAGAGGAACAGGCACATACATCCCTGACATGTGCCATAATCGTTACAAAGATTTGCTATTA TGGATGACAATGAGCAATCCAGATTCTAGTCATAGACCATTGTTGAAATCACCTCGAAAGAGTGACTATGCTGAAGATTCCCCAATGACGGTGAAGAGTA GGAATGGCAACTGCCTTAATATTTCACCAGATCAAATCTCACCAGGGATGGAGAAGAGTGAGAATGGCAGCTGCCTCGATTTTTCACTAGATCAATTCCC ACTTCTTCCTTGCAGTGAGAATTCCATGTCATCAGAAATCCATCATTCGTATCAAACCACCACTAAGGCTTGCCAGGCGAAGAATTGTTCTGCCACCTTA GGGAATATTCAGTTTGGATCCTTACCATTACTGCTAGGAATGCCTTCATCAGTGGCGAAGAAGCAAGCAGATTCAGGAGTTTTAACATCTATGTATAGAA TGCCAGCTGTCCAGAGAAAAAAAATGCAGAAGCAACAAGGGTTCTTGGAGAGTCCTGAGAAAATGGTTCACAGACAACATTTTCAAGTGAAGAATGATAC GGCTTTCCCCCTCTCTGACCACCAGGGCACTCACATGTGGAGATTTAAGTAA
AA sequence Show only first row Show all	>Potri.019G056800.1 pacid=42774567 polypeptide=Potri.019G056800.1.p locus=Potri.019G056800 ID=Potri.019G056800.1.v4.1 annot-version=v4.1 MGNLQRSLSPSSLSTSSSSSHGPHPLQIDPELWLMAEKRTQEILYTIQPTFASEHKRMEVIDYIQSLIKYYFTVEVFAFGSVPLKTYLPDGDIDLMVLSH QNMEEELARGVCTLLQREELDPEFQVNDVQYIHAQVKLVKCSVKNISVDISFNQMAGPSALCFLEQVDQLIGQDHLFKRSIILIKAWCFYESRILGAHHG LISTYALQILVLNIINVFHSSLPDPLAVLYKFLDYYSAFDWDNYCVSINGPIPISSFPQTDSTHNNGNESLISQEFLRNFRDKFAFLMKELENGAHEFPI KHLNIVDPLKSSNNLGRSVNKGNFHRIRGALSYGAQRLGEIIALPGEAMGGRLEKFFMNTLDRNGRGQRPDADVPVPAFGTGRSEASDLNGDYDKYYSGL LHGQWYHSYALPVPPQPSSPSSPSQIKQKSARDVLPQLLQSKQDILSQRGTEVFFPRQKCHPYASQVHVAISGIDTMRKSRGTGTYIPDMCHNRYKDLLL WMTMSNPDSSHRPLLKSPRKSDYAEDSPMTVKSRNGNCLNISPDQISPGMEKSENGSCLDFSLDQFPLLPCSENSMSSEIHHSYQTTTKACQAKNCSATL GNIQFGSLPLLLGMPSSVAKKQADSGVLTSMYRMPAVQRKKMQKQQGFLESPEKMVHRQHFQVKNDTAFPLSDHQGTHMWRFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56320			PAP/OAS1 substrate-binding dom...		Potri.019G056800 [exp]	0	1
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	3.16	0.8661
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.011G049700 [exp]	7.07	0.8342
					Potri.009G069751 [exp]	7.07	0.7972
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	7.74	0.8372
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	9.48	0.8417
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.018G047500 [exp]	9.53	0.8276
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Potri.015G050800 [exp]	13.41	0.8226
AT1G28320		DEG15	protease-related (.1)		Potri.004G046900 [exp]	13.67	0.8123
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	14.07	0.8310
AT3G61690			nucleotidyltransferases (.1)		Potri.014G097600 [exp]	16.12	0.8020

Compare expression of checked genes

Potri.019G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.