Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47540 411 / 6e-144 Mo25 family protein (.1) AT4G17270 372 / 1e-128 Mo25 family protein (.1) AT2G03410 339 / 2e-115 Mo25 family protein (.1) AT5G18940 184 / 4e-55 Mo25 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G014800 [exp] 434 / 4e-153 AT5G47540 569 / 0.0 Mo25 family protein (.1) Potri.010G155400 [exp] 428 / 7e-151 AT5G47540 588 / 0.0 Mo25 family protein (.1) Potri.016G011100 [exp] 428 / 7e-151 AT5G47540 589 / 0.0 Mo25 family protein (.1) Potri.002G222800 [exp] 345 / 7e-118 AT5G47540 458 / 1e-162 Mo25 family protein (.1) Potri.014G162100 [exp] 340 / 8e-115 AT5G47540 461 / 1e-162 Mo25 family protein (.1) Potri.010G155300 [exp] 221 / 1e-70 AT5G47540 348 / 6e-121 Mo25 family protein (.1) Potri.003G055900 [exp] 200 / 7e-64 AT5G47540 153 / 3e-46 Mo25 family protein (.1) Potri.010G028700 [exp] 189 / 3e-57 AT5G18940 469 / 5e-167 Mo25 family protein (.1.2) Potri.008G198900 [exp] 179 / 4e-53 AT5G18940 436 / 5e-154 Mo25 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027342 [exp] 423 / 1e-148 AT5G47540 592 / 0.0 Mo25 family protein (.1) Lus10010497 [exp] 422 / 4e-148 AT5G47540 594 / 0.0 Mo25 family protein (.1) Lus10017565 [exp] 421 / 6e-148 AT5G47540 593 / 0.0 Mo25 family protein (.1) Lus10039045 [exp] 404 / 3e-141 AT5G47540 517 / 0.0 Mo25 family protein (.1) Lus10036523 [exp] 322 / 8e-108 AT5G47540 446 / 1e-156 Mo25 family protein (.1) Lus10041405 [exp] 312 / 3e-104 AT5G47540 446 / 3e-157 Mo25 family protein (.1) Lus10034014 [exp] 178 / 7e-53 AT5G18940 522 / 0.0 Mo25 family protein (.1.2) Lus10012762 [exp] 169 / 6e-49 AT5G18940 512 / 0.0 Mo25 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08569 [poplar] [flax] Mo25 Mo25-like
Representative CDS sequence Show only first row Show all	>Potri.019G057100.1 pacid=42774446 polypeptide=Potri.019G057100.1.p locus=Potri.019G057100 ID=Potri.019G057100.1.v4.1 annot-version=v4.1 ATGGGATTTTCTCATATATTTCTCAGGAACAAAACTAAGATTACTCCTGTCGAAATAGTACGAGAAACTCAGAGGCTCTTGTTGTGTATTAGTTCTGATC ATGGTTTAAAACAAGAAGAGAAGAAGAAGAAGGCAGATTTAAAACAAGAAAACAAGGCGGCGGCAGCGCTGGCTAAAAATATCAGGGCTTTGAAGTCAAT TGCTTATGGCAATGATGAGTCTTCTGCAGTCTCAAGAGCCTGTGCACAATTGACAGAGGAGTTCTTCAGAGAGAACACACTTCCTCTCCTCATCGTCTGT CTTCCGAAATTGACCTTGGAGGCCCAGAGAGATGCCACTCAAGTTGTTGCAAATCTACTACGGCATAAAGTTCAGTCCCGGTTGATTGCATCAGAATACC TGGAGAAAAATACTGATGTTCTTGATCTTTTGGTAGCAGGTTGTGGAAACATGGACATGGCTATCCAATACGGTGAAATTCTAAGGGCGTGTCTGCGTCA CCAGAGTGCTGCGAGATATGTTCTTGAATCACCAGCACATCTGAAGAAGTTTTTTGATTATATACAGCTTCGGTATTTCGACATTGCCTCAAATGCCGCC TTAACGCTCAAGGAACTATTGACAAGGCATAAATATTCTCTAGTTCCTGAATTTCTTTCTAAGAACTATGAATGGTTCTTCGCGGATTTTAATTCGAAGC TGCTGGAATCCTCTGATTATTTTACAAGAATACAAGCTACCAAGCTGCTGGGACACATGCTGTTGGATCACTCTAATTCAGCTGTGATGGCACGATACGT GAGCTCGAGGAACAATCTGAGGATTGTTATGAATCTCCTCAGGGATTCAAGTAAGTGCATCCGGATAAAGGCATTTCATGTTTTCAAGCTCTTCGCTGCA AATCAAAATAGGCCTTTCGACATCATCACCGTGCTTGTGGCAAACAGGAGCAAGCTTCTTCGTTTCCTTGCTGATTTCAAGACAGATAAAGAGGATGAAT GTTTCGAGGCAGACAAAGCTCAAGTCATGAAAGAAATAGTTGCCCTCGATCCTAGAGATCATGAGAGCTATGAGTGA
AA sequence Show only first row Show all	>Potri.019G057100.1 pacid=42774446 polypeptide=Potri.019G057100.1.p locus=Potri.019G057100 ID=Potri.019G057100.1.v4.1 annot-version=v4.1 MGFSHIFLRNKTKITPVEIVRETQRLLLCISSDHGLKQEEKKKKADLKQENKAAAALAKNIRALKSIAYGNDESSAVSRACAQLTEEFFRENTLPLLIVC LPKLTLEAQRDATQVVANLLRHKVQSRLIASEYLEKNTDVLDLLVAGCGNMDMAIQYGEILRACLRHQSAARYVLESPAHLKKFFDYIQLRYFDIASNAA LTLKELLTRHKYSLVPEFLSKNYEWFFADFNSKLLESSDYFTRIQATKLLGHMLLDHSNSAVMARYVSSRNNLRIVMNLLRDSSKCIRIKAFHVFKLFAA NQNRPFDIITVLVANRSKLLRFLADFKTDKEDECFEADKAQVMKEIVALDPRDHESYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47540			Mo25 family protein (.1)		Potri.019G057100 [exp]	0	1
AT4G10270			Wound-responsive family protei...		Potri.013G147900 [exp]	4.69	0.8872
					Potri.002G161801 [exp]	5.47	0.9214
					Potri.001G020080 [exp]	5.65	0.9076
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045100 [exp]	10.24	0.8923
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Potri.006G202500 [exp]	10.58	0.8307
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Potri.001G221150 [exp]	10.67	0.8705
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Potri.002G125300 [exp]	10.95	0.9205
AT1G20140		ASK4	SKP1-like 4 (.1)		Potri.009G135800 [exp]	11.22	0.8983	SKP1.4
AT5G04420			Galactose oxidase/kelch repeat...		Potri.008G030901 [exp]	14.24	0.9100
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045000 [exp]	14.96	0.8553

Compare expression of checked genes

Potri.019G057100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.