Plant FIBer expression Database

Potri.019G057200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09795 565 / 0 HISN1B, ATATP-PRT2 ATP phosphoribosyl transferase 2 (.1)
AT1G58080 551 / 0 HISN1A, ATATP-PRT1 ATP phosphoribosyl transferase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G222400
[exp]
602 / 0 AT1G09795 552 / 0.0 ATP phosphoribosyl transferase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003685
[exp]
573 / 0 AT1G09795 580 / 0.0 ATP phosphoribosyl transferase 2 (.1)
Lus10028993
[exp]
555 / 0 AT1G09795 558 / 0.0 ATP phosphoribosyl transferase 2 (.1)
Lus10003700
[exp]
43 / 0.0005 AT1G14850 811 / 0.0 nucleoporin 155 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0177 PBP PF01634 HisG ATP phosphoribosyltransferase
CL0089 GlnB-like PF08029 HisG_C HisG, C-terminal domain
Representative CDS sequence
>Potri.019G057200.1 pacid=42773677 polypeptide=Potri.019G057200.1.p locus=Potri.019G057200 ID=Potri.019G057200.1.v4.1 annot-version=v4.1
ATGTCTTTGTCTAGACTCCAGCAGCCTTGTTATTTGCAACAATGCCCCTCCGTTCTCTCCCCCTCCATCCCTCTTCTTTGTTCCTTCTCTTTTCGCGTCT
CCCCCTATTCTCAGAGACAAATACGACTCCATTTCGACGGCCACACTAGTAGTGCTGCTGCTTGTTGTAGCTTGTCTCAGCAGCAGCAATCTCAAATCTT
ATCGTCGGTTACTAATGGAAGTACAGTCTCTGACAGGAAAGAGATTCGTTTAGGTTTGCCTAGCAAAGGACGCATGGCTGCTGACACTCTTGATCTTCTC
AAGGATTGTCAACTATCTGTGAAGCATGTGAATCCTCGACAATACGTTGCAGAAATTCCTCAGCTTACCAACTTGGAAGTTTGGTTCCAAAGACCCAAAG
ACATTGTACGAAAGTTGCTATCAGGAGATTTGGACCTTGGAATTGTGGGTTTTGATACTTTCAGCGAATTCGGACTGGGAAACGAAGATCTTATCATTGT
TCATGATGCTCTTGGATATGGGGAATGCCGTTTATCCATTGCAATTCCCAAATATGGGATTTTTGAAAATATAAATTCACTAAGGGAACTAGCACAAATG
CCTCAATGGACAACTGAAAAACCTCTTCGTGTTGCTACCGGCTTCAGTCATCTGGGTCCTAAATTTATGAAGGATAATGGATTCACGCATGTGACATTTT
CAACTGCTGACGGAGCATTGGAAGCTGCTCCTGCGATGGGGATAGCTGATGCTATTTTGGACCTTGTGAGCAGTGGAACAACTCTGAAAGAGAACAACTT
GAAAGAAATAGAAGGTGGGGTTGTGTTGGAGAGCCAGGCTGTTCTTGTTGCTACAAGAAAATCATTGATCCAACGGGAAGATGTGAGGAGCATAACGAAA
GAGATTCTTGAAAGGTTTGAGGCGCATTTGAGGGCAGGTGGTCAGTTCACGGTGACTGCAAACATGAGAGGAAGTAGCACAGAAGAAGTGGCTGCTCGAG
TACTGAGCCAACCATCTTTGTCTGGGTTGCAGGGACCTACTGTAAGTCCAGTTTTCTGCAAACGTGATGGAGAGGTTGTGTCAGATTTCTATGCCATAGT
CATATGTGTTCCCAAGAAGGCATTATATGAGTCCGTACAGCAACTTAGAGAGATTGGAGGCAGCGGAGTTTTAATTTCTCCTTTAACATACATTTTCGAG
GAAGTGACACCAAGATGGCAGGAGCTTCTTTTAAAACTCGATTTATAA
AA sequence
>Potri.019G057200.1 pacid=42773677 polypeptide=Potri.019G057200.1.p locus=Potri.019G057200 ID=Potri.019G057200.1.v4.1 annot-version=v4.1
MSLSRLQQPCYLQQCPSVLSPSIPLLCSFSFRVSPYSQRQIRLHFDGHTSSAAACCSLSQQQQSQILSSVTNGSTVSDRKEIRLGLPSKGRMAADTLDLL
KDCQLSVKHVNPRQYVAEIPQLTNLEVWFQRPKDIVRKLLSGDLDLGIVGFDTFSEFGLGNEDLIIVHDALGYGECRLSIAIPKYGIFENINSLRELAQM
PQWTTEKPLRVATGFSHLGPKFMKDNGFTHVTFSTADGALEAAPAMGIADAILDLVSSGTTLKENNLKEIEGGVVLESQAVLVATRKSLIQREDVRSITK
EILERFEAHLRAGGQFTVTANMRGSSTEEVAARVLSQPSLSGLQGPTVSPVFCKRDGEVVSDFYAIVICVPKKALYESVQQLREIGGSGVLISPLTYIFE
EVTPRWQELLLKLDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09795 HISN1B, ATATP-P... ATP phosphoribosyl transferase... Potri.019G057200
[exp]
0 1
AT3G48560 TZP5, IMR1, ALS... TRIAZOLOPYRIMIDINE RESISTANT 5... Potri.012G098300
[exp]
2.00 0.9403
AT3G21300 RNA methyltransferase family p... Potri.001G195300
[exp]
9.74 0.9044
AT4G28730 GrxC5 glutaredoxin C5, Glutaredoxin ... Potri.002G254100
[exp]
10.24 0.9352 PtrcGrx_S12
AT2G43090 Aconitase/3-isopropylmalate de... Potri.003G107800
[exp]
16.73 0.9126
AT1G78630 EMB1473 embryo defective 1473, Ribosom... Potri.001G384600
[exp]
22.40 0.9355
AT2G23820 Metal-dependent phosphohydrola... Potri.006G178600
[exp]
29.88 0.9234
AT1G07320 EMB2784, RPL4 EMBRYO DEFECTIVE 2784, ribosom... Potri.006G221100
[exp]
31.49 0.9349
ATCG00900 ATCG00900.1, RP... CHLOROPLAST RIBOSOMAL PROTEIN ... Potri.004G140500
[exp]
37.34 0.9343
AT3G52150 RNA-binding (RRM/RBD/RNP motif... Potri.009G065900
[exp]
39.79 0.9325
AT3G27830 RPL12-A ribosomal protein L12-A (.1) Potri.001G346100
[exp]
41.58 0.9308 Pt-RPL12.6

Potri.019G057200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.