Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EXPA8.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40610 392 / 7e-140 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G05290 362 / 1e-127 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT1G69530 358 / 4e-126 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 353 / 3e-124 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G26770 350 / 5e-123 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT2G39700 340 / 4e-119 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G56320 337 / 9e-118 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G37640 333 / 4e-116 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT3G55500 332 / 6e-116 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G02260 331 / 2e-115 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154700 [exp] 401 / 2e-143 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.016G135200 [exp] 400 / 1e-142 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 394 / 1e-140 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.008G088300 [exp] 365 / 4e-129 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 365 / 6e-129 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 350 / 3e-123 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.010G202500 [exp] 341 / 2e-119 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.004G123200 [exp] 340 / 4e-119 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.013G060800 [exp] 338 / 1e-118 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034227 [exp] 394 / 4e-140 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10029038 [exp] 375 / 9e-133 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10008603 [exp] 374 / 1e-132 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10042214 [exp] 372 / 1e-131 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10009917 [exp] 359 / 1e-126 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10036763 [exp] 356 / 2e-125 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 352 / 1e-123 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10026614 [exp] 350 / 5e-123 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10040286 [exp] 333 / 4e-116 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10023407 [exp] 331 / 2e-115 AT2G39700 445 / 3e-160 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.019G057500.3 pacid=42774330 polypeptide=Potri.019G057500.3.p locus=Potri.019G057500 ID=Potri.019G057500.3.v4.1 annot-version=v4.1 ATGACAATGGCAGCTACTATCTCTCTTCTCTTGTTTGCGCTCCACTTGTGCCTTATAGGCACTTATGGGGACTCCGGAGGGTGGCAAGGTGGCCATGCCA CTTTCTATGGCGGGGGTGATGCTTCTGGGACAATGGGAGGTGCTTGTGGGTATGGCAATTTGTACAGTCAAGGGTATGGTACTAACACTGCAGCACTTAG TACTGCCCTTTTCAACAATGGCTTGAGCTGTGGTTCTTGTTATGAGATGAGATGTGACAATGATCCCAAATGGTGCCTCCCTGGGTCCATCACCGTCACA GCCACTAACTTCTGCCCCCCTAACTCTGCCTTGTCTAATGACAACGGTGGCTGGTGTAATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCAGCTTTCT TGCAAATTGCTCAATACAGAGCTGGAATTGTACCAATCTCATTCAGAAGGGTCCCCTGTGTCAAGAAAGGAGGAATAAGGTTTACCATCAATGGACACTC TTACTTTAATTTGGTGTTGATCACAAACGTTGCTGGAGCAGGAGATGTTCATTCAGTGTCGATCAAGGGTTCTAAGACAGGGTGGCAAGCTATGTCAAGG AACTGGGGCCAGAACTGGCAAAGCAATTCTTACCTCAATGGCCAAAGTCTTTCTTTCCAAGTCACCACAAGTGATGGTAGGACTGTGACTAGCTACAACG CAGTGCCAGAAAACTGGCAATTTGGCCAAACATTTTCAGGCGGTCAATTCTAG
AA sequence Show only first row Show all	>Potri.019G057500.3 pacid=42774330 polypeptide=Potri.019G057500.3.p locus=Potri.019G057500 ID=Potri.019G057500.3.v4.1 annot-version=v4.1 MTMAATISLLLFALHLCLIGTYGDSGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDNDPKWCLPGSITVT ATNFCPPNSALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHSVSIKGSKTGWQAMSR NWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSYNAVPENWQFGQTFSGGQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.019G057500 [exp]	0	1	Pt-EXPA8.1
AT5G67090			Subtilisin-like serine endopep...		Potri.002G124500 [exp]	3.00	0.8845
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.004G032100 [exp]	29.39	0.8785
AT3G60470			Plant protein of unknown funct...		Potri.005G008350 [exp]	58.99	0.8634
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077800 [exp]	89.75	0.8436
AT4G30400			RING/U-box superfamily protein...		Potri.018G098500 [exp]	100.59	0.8417
AT1G52855			unknown protein		Potri.013G145100 [exp]	115.10	0.8039
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	135.22	0.8155
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	151.32	0.8129
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Potri.001G092200 [exp]	152.90	0.8443
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052300 [exp]	161.80	0.8308

Compare expression of checked genes

Potri.019G057500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.