Plant FIBer expression Database

Potri.019G057800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05270 270 / 7e-93 Chalcone-flavanone isomerase family protein (.1.2)
AT3G55120 73 / 1e-15 A11, CFI, TT5 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1)
AT1G53520 67 / 3e-13 Chalcone-flavanone isomerase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G213000
[exp]
84 / 9e-20 AT3G55120 300 / 1e-103 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1)
Potri.011G101800
[exp]
74 / 1e-15 AT1G53520 282 / 4e-95 Chalcone-flavanone isomerase family protein (.1)
Potri.001G380700
[exp]
60 / 9e-11 AT1G53520 246 / 2e-81 Chalcone-flavanone isomerase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012878
[exp]
244 / 6e-82 AT5G05270 230 / 1e-76 Chalcone-flavanone isomerase family protein (.1.2)
Lus10030529
[exp]
233 / 1e-78 AT5G05270 222 / 2e-74 Chalcone-flavanone isomerase family protein (.1.2)
Lus10030310
[exp]
81 / 8e-19 AT3G55120 270 / 5e-92 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1)
Lus10003311
[exp]
78 / 1e-17 AT3G55120 274 / 8e-94 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1)
Lus10026174
[exp]
62 / 4e-11 AT1G53520 259 / 3e-84 Chalcone-flavanone isomerase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0560 Chalcone-like PF02431 Chalcone Chalcone-flavanone isomerase
Representative CDS sequence
>Potri.019G057800.1 pacid=42773793 polypeptide=Potri.019G057800.1.p locus=Potri.019G057800 ID=Potri.019G057800.1.v4.1 annot-version=v4.1
ATGGGCACGGAAATGGTTAACGTTGACGAGATCCCTTTCCCTCCACAGATTGCAATTGCAACGAAGCCATTATCTCTGCTTGGTCATGGAATTACCGACA
TCGAAATACACTTTCTCCAAATTAAGTTCACTGCAATTGGAGTTTACTTGGAGCCTAAAATCGTGGGCCACTTGCAACAATGGAAGGGGAAACCTGGAAA
CGAGCTAGCAGAAAATGATGATTTCTTTGAAGCCCTGATTGCCGCTCCCGTTGAGAAATTCTTGAGGGTCGTGGTGATCAAGGAGATCAAAGGTTCCCAA
TATGGAGTGCAGCTAGAGAGCGTGGTAAGGGACCGATTAGCAGATGCTGACAAATATGAAGAGGAGGAGGAAGAAGCCCTGGAGAAAATCGTTGAATTCT
TCCAGTCAAAGTACATGAAGAAGAACTCCATAATCACATTTTATTTTCCATCAACTTCACCTACAGCTGAGATTGGATTTGCCACGGAAGGGAAAGAAGA
GTCGAAAATCAAGGTGGAGAACGCAAATGTTGTGGAGATGATCAAGAAATGGTACTTGGGTGGAACCAGAGGGGTTTCAGCTACAACCATATCCTCCCTT
GCTAACACCATTTCGGCAGAGCTGGCTAAATGA
AA sequence
>Potri.019G057800.1 pacid=42773793 polypeptide=Potri.019G057800.1.p locus=Potri.019G057800 ID=Potri.019G057800.1.v4.1 annot-version=v4.1
MGTEMVNVDEIPFPPQIAIATKPLSLLGHGITDIEIHFLQIKFTAIGVYLEPKIVGHLQQWKGKPGNELAENDDFFEALIAAPVEKFLRVVVIKEIKGSQ
YGVQLESVVRDRLADADKYEEEEEEALEKIVEFFQSKYMKKNSIITFYFPSTSPTAEIGFATEGKEESKIKVENANVVEMIKKWYLGGTRGVSATTISSL
ANTISAELAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05270 Chalcone-flavanone isomerase f... Potri.019G057800
[exp]
0 1
AT1G12050 fumarylacetoacetase, putative ... Potri.006G009200
[exp]
1.00 0.9353
AT5G49330 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSI... Potri.001G086700
[exp]
2.82 0.8828
AT3G55120 A11, CFI, TT5 TRANSPARENT TESTA 5, CHALCONE ... Potri.010G213000
[exp]
4.24 0.8806 CHI.1
AT5G49900 Beta-glucosidase, GBA2 type fa... Potri.004G227200
[exp]
6.00 0.8219
AT4G24204 RING/U-box superfamily protein... Potri.007G050500
[exp]
6.63 0.8686
AT1G65930 cICDH cytosolic NADP+-dependent isoc... Potri.010G176000
[exp]
6.92 0.7880 IDH1.2
AT5G13930 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE ... Potri.003G176800
[exp]
8.66 0.8500 CHS.5
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Potri.013G073300
[exp]
12.00 0.8475 F3H1
AT5G42800 M318, TT3, DFR dihydroflavonol 4-reductase (.... Potri.005G229500
[exp]
12.64 0.8353 Pt-DFR.1
AT4G30470 NAD(P)-binding Rossmann-fold s... Potri.006G178700
[exp]
15.32 0.7379

Potri.019G057800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.