Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36110 279 / 2e-88 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) AT2G42850 252 / 8e-78 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT1G12740 228 / 5e-69 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT2G29090 226 / 6e-68 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G45340 222 / 1e-66 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G13730 218 / 1e-64 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT3G19270 217 / 1e-64 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT4G19230 215 / 4e-64 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT1G05160 207 / 6e-61 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 204 / 8e-60 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G115000 [exp] 501 / 6e-175 AT5G36110 295 / 7e-95 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017800 [exp] 377 / 1e-126 AT5G36110 317 / 1e-103 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G001500 [exp] 364 / 3e-121 AT5G36110 331 / 8e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G001300 [exp] 356 / 4e-118 AT5G36110 332 / 2e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017633 [exp] 346 / 3e-114 AT5G36110 301 / 3e-97 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017700 [exp] 344 / 1e-113 AT5G36110 304 / 2e-98 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.007G002400 [exp] 308 / 1e-99 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.006G085500 [exp] 300 / 1e-96 AT5G36110 573 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G137950 [exp] 294 / 4e-95 AT5G36110 261 / 7e-83 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040055 [exp] 361 / 6e-120 AT5G36110 318 / 7e-104 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Lus10010940 [exp] 276 / 1e-86 AT2G42850 571 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Lus10035685 [exp] 231 / 8e-70 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10024495 [exp] 223 / 6e-67 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10034768 [exp] 222 / 2e-66 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10018898 [exp] 217 / 1e-64 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10033308 [exp] 216 / 3e-64 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10019858 [exp] 216 / 8e-64 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10028594 [exp] 214 / 2e-63 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10012675 [exp] 207 / 8e-61 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.019G057901.1 pacid=42774362 polypeptide=Potri.019G057901.1.p locus=Potri.019G057901 ID=Potri.019G057901.1.v4.1 annot-version=v4.1 ATGGATCTCATGATTCTTTTTGAGCATCCGTCTTTTGAATCCAAAGTATCCTCACCAACCATAATTCTAGTAACACTGCTTGCCCTTGTTGCAGGATTCT ACTACAAACATAAGGCCTCAAAACATGCAGGCAAGAAACTCCCACCTGGTTCATTGGGATTTCCACTCGTGGGCGAGTCTATAAGCCTTGTGAGGGCACA GAAACGAGACAAGATTGATGATTGGATGTGGAAACGGATCGACAAGTTCGGACCAATATTTAAAACCTCAATTTTCGGTACCAAGACTGTGGTTCTGACA GGCCAAGCTGGCAACAGGTTTTTGTTCAGTGGAGGTGATGGCATCTCTTACAAGCAACCAAAGACGATTGCCAGCATACTAGGAAAGTACAGCCTCTTTG AGATTTCTGGGTCTCGGCATAAGCTTATCAGGGGTGCAATAGTTGGGTTTTTGAAGCCCGAGAGAATCCAGAAAATTGTAGGTGAAATAAATTTACTGGT CCAGCAACAACTATCCAAGGAATTGGATGGAGAAGATTCTGTAAAGATAGTTCCATTCATGAAGAGGATTGCATTCAATATCACTTGCAATATCTTTTTT GGAATACCAGACGGGAAGGAAAAAGATACGCTCTTTGAAGAATTCTCAGTTGCTGTTAAAGGGTGTTGGGCTGTTCCCTTGGATATTCCAGGGACTGTAT TTCATAGAGCAATGCAAGCTCGAGCTCGCCTCTGCAAAATACTCTCAAAAATTATTGATGAAAGGAAAAGACAAATGGAAGAAGGGACAGTTGATGTCAA TGAAAACATCATCTACAGCTTTCTTAGTCTGAGAGACGAAAATGATGAACCTTTGATAGAAGAGGAGATTCTTGACATGGTCCTATCCTTAATAATGGCT AGTCATGATTCAACCACGATTCTCTTGTGCCTGCTCGTGAGGCTCCTTTCTCGAGATGCCGAGATATACAACAAGGTTCTGGAAGAGCAAAGGGAGGTCA TCAAGGTTAAAGGAGGCAGAGATGGGAAGATCACATGGAACGAAATTCAAATGATGAAGTATAGCTGGAGAGTAGCTCAAGAGGTCATGAGATTTTATCC TCCAATTTTTGGCAACTTTCGACAGATAACCAAAGACATCGAGTTCGATGGCTTCGATATTCCCAAAGGATGGCAGGTTTTGTGGGTGGCTTCTGGGACG CACATGGACAAGAGCATTTTTGAAGATCCAGAGAAGTTCGATCCCTCAAGATTCGACACTTCATCTAAAACATTCCCTCCATACACCTATGTTCCTTTTG GAGCAGGCCTGCGCATCTGCCCTGGAGCAGACTTTGTTCGAATTGAATCAATGCTGGTAATCCATCATTTTATAACGAAGTATCAGTGGAAAGAAATCAT TCCTGACGAGCCTATAATTCGTGATCCCATGCCTTATCCAGCAATGGGCCTTCCTGTAAAGTTTTATCCAAGAAGTGGCGATCTGGCCATAGCAGGCAAC GATATCTGA
AA sequence Show only first row Show all	>Potri.019G057901.1 pacid=42774362 polypeptide=Potri.019G057901.1.p locus=Potri.019G057901 ID=Potri.019G057901.1.v4.1 annot-version=v4.1 MDLMILFEHPSFESKVSSPTIILVTLLALVAGFYYKHKASKHAGKKLPPGSLGFPLVGESISLVRAQKRDKIDDWMWKRIDKFGPIFKTSIFGTKTVVLT GQAGNRFLFSGGDGISYKQPKTIASILGKYSLFEISGSRHKLIRGAIVGFLKPERIQKIVGEINLLVQQQLSKELDGEDSVKIVPFMKRIAFNITCNIFF GIPDGKEKDTLFEEFSVAVKGCWAVPLDIPGTVFHRAMQARARLCKILSKIIDERKRQMEEGTVDVNENIIYSFLSLRDENDEPLIEEEILDMVLSLIMA SHDSTTILLCLLVRLLSRDAEIYNKVLEEQREVIKVKGGRDGKITWNEIQMMKYSWRVAQEVMRFYPPIFGNFRQITKDIEFDGFDIPKGWQVLWVASGT HMDKSIFEDPEKFDPSRFDTSSKTFPPYTYVPFGAGLRICPGADFVRIESMLVIHHFITKYQWKEIIPDEPIIRDPMPYPAMGLPVKFYPRSGDLAIAGN DI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G057901 [exp]	0	1
AT2G23840			HNH endonuclease (.1)		Potri.013G059500 [exp]	2.44	0.9712
AT5G23240			DNAJ heat shock N-terminal dom...		Potri.007G072600 [exp]	3.46	0.9697
AT1G07040			unknown protein		Potri.008G194800 [exp]	3.87	0.9630
AT5G05710			Pleckstrin homology (PH) domai...		Potri.010G190500 [exp]	4.47	0.9466
AT1G13680			PLC-like phosphodiesterases su...		Potri.011G144900 [exp]	4.89	0.9625
AT3G45310			Cysteine proteinases superfami...		Potri.006G141700 [exp]	5.29	0.9534	Pt-ELSA.1
AT3G26580			Tetratricopeptide repeat (TPR)...		Potri.013G090000 [exp]	5.65	0.9530
AT5G02420			unknown protein		Potri.009G003400 [exp]	5.65	0.9349
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.001G389200 [exp]	6.00	0.9528
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003100 [exp]	6.63	0.9276

Compare expression of checked genes

Potri.019G057901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.