Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05240 302 / 2e-95 Uncharacterised conserved protein (UCP030365) (.1) AT2G40630 135 / 8e-34 Uncharacterised conserved protein (UCP030365) (.1) AT5G10110 45 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G091100 [exp] 414 / 2e-139 AT5G05240 259 / 3e-80 Uncharacterised conserved protein (UCP030365) (.1) Potri.013G157700 [exp] 116 / 4e-28 AT5G05240 103 / 8e-24 Uncharacterised conserved protein (UCP030365) (.1) Potri.007G090500 [exp] 46 / 4e-05 AT5G65120 176 / 2e-52 unknown protein Potri.005G077400 [exp] 43 / 0.0005 AT5G10110 150 / 2e-42 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029030 [exp] 456 / 6e-155 AT5G05240 313 / 4e-100 Uncharacterised conserved protein (UCP030365) (.1) Lus10034236 [exp] 456 / 7e-155 AT5G05240 312 / 9e-100 Uncharacterised conserved protein (UCP030365) (.1) Lus10030527 [exp] 158 / 3e-43 AT2G40630 169 / 6e-48 Uncharacterised conserved protein (UCP030365) (.1) Lus10016802 [exp] 43 / 0.0005 AT5G65120 160 / 2e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G058200.1 pacid=42773543 polypeptide=Potri.019G058200.1.p locus=Potri.019G058200 ID=Potri.019G058200.1.v4.1 annot-version=v4.1 ATGGAAGATCGAGGAGGGGATACAGGGAGGTCCAGATCTGATTCCAAGTTGGCTGGTGAGAAGCGGGCTAGTGGTGAATTGGGAGAGAAATCAGAAGTTG CTCGAAAAAAGATTAAAATGCGTAATCTTGAATCTGTGCTGAGGTTTGAAGAAGTAAGCAGCAATCACTTGAAAAACAAAGAAGACGACGACCGCTTTCA GTTTACTGAAAAGATGTCCCAAGTCACCAATGTTCCAGTAACCTTGGACTTCAATGCTTATCGAGCAGAAAGAAGTGGAAGGACCGCATTATCAGTTGAG GTCACTGCTGCCTCTAAGCCACTGGATCTCAGTAATGAAGCTTGCATTGCTAATCATTTGGTGAGAAAGGATATGGCAGAACATGCTGAGAATTGTAATG AAGTCCCATTGCTCAAGAAGCATGAGAGCAAACATGACAATAAATGCGCAACCTCTGTTGGCTTTGGCTTGGATCTGAATGCACAGGATGATAGCTCTGT GAACCAGGAACCATTCCACACTCAGAAAGATCATGAGAAGACAAGAGATATTTCTGAGTGTGGGAGTACTACTGGTCCAGTGCAGGAAAAGGATCCATTA AGAATGTGGAAAGAAATGAAGCAAAACGGTTTTCTGTCATCTTCATATGGAGGGATTTCAATTCAAAGTGGTTTTATGACATCTTCTCATGGAGGGATAC CAATGGCAAAGCAACGTGGGAGGAAACCCAAGGATGATGTTCTCAAGGAAAAGATGGAACTTGCAAAGAGAGAGCAGGTGGATAGGTTTACCAAGATTGC TGCTCCAAGTGGATTGCTAAATGGCTTGAACCCTGGGATCATAAACCATGTGAGAAATAAAAAGCAGGTCCATTCCATAATAGAGGCTTTGGTAAGGTCT GAAAAACTCGAAAATGGCTGTCTTGAAAGCAAACAAGCATATCTAAAATCTGGAACTAAAGAAAACAATAGTATGAGTGATTCTGGAATACATCGACTCA GTTTTTCTCATGGAAATGGGAGTTCAACTTCTTTATTTGGGAGCAAGCAAACAAGAGGGTACCCTATATCCAACGGGGAGGGTGACTCCAGCATGGTAGA CATGGTACATGACAGAAATTTTGTTTCACACTCAGCTGCCAGTGAGAATGATGGATTGACATTGAAGTTGTCTTCATCAACTAACGCCTTGGAGGAATCT AGAACTGTTCTGAATGAGGAATCAGCAAACAACGCAAGTGTTTCTTGTCTTTCTGTGAAAGCTGCTACTGTTTCTTCTCAATGGTTGGAACTTCTTCATC AAGACATTAGAGGACGGATAGCAGCATTGCGCCGAAGTAGGAAGAGAGTCCGAGCAGTGATAACTACTGAGTTACCATTTTTAATATCAAAAGAGTTCTC AGCTATTGAAGTGGACGGTGCTTATACTATGAAAAGTTCTTCAGAAGTAGTGTCCAATAATGCAACAGCTGCCATGCATCAAGCAAGATGGAGAGCATTG TTTGATCAGTTGGACAGTGCACTTTCTGAAGAAGAGAAACAACTTGAAACTTGGTTGAGCCAAGTAAAGGAAATGCAAGTGCACTGTGATCAGGGGCTGC AACATTTGCACTATAATGCAATTTTAGGTTACCCCAGAACTGAGAAAGCAGATAGCTCGCAGAAGGAATTGGCTGTTAGAGCTGCTGCAGCTTCCATCTA TTCAACCTGCAATTTCCTGAGTTCGAAGGAGAATGTATCTTGTTTCTGA
AA sequence Show only first row Show all	>Potri.019G058200.1 pacid=42773543 polypeptide=Potri.019G058200.1.p locus=Potri.019G058200 ID=Potri.019G058200.1.v4.1 annot-version=v4.1 MEDRGGDTGRSRSDSKLAGEKRASGELGEKSEVARKKIKMRNLESVLRFEEVSSNHLKNKEDDDRFQFTEKMSQVTNVPVTLDFNAYRAERSGRTALSVE VTAASKPLDLSNEACIANHLVRKDMAEHAENCNEVPLLKKHESKHDNKCATSVGFGLDLNAQDDSSVNQEPFHTQKDHEKTRDISECGSTTGPVQEKDPL RMWKEMKQNGFLSSSYGGISIQSGFMTSSHGGIPMAKQRGRKPKDDVLKEKMELAKREQVDRFTKIAAPSGLLNGLNPGIINHVRNKKQVHSIIEALVRS EKLENGCLESKQAYLKSGTKENNSMSDSGIHRLSFSHGNGSSTSLFGSKQTRGYPISNGEGDSSMVDMVHDRNFVSHSAASENDGLTLKLSSSTNALEES RTVLNEESANNASVSCLSVKAATVSSQWLELLHQDIRGRIAALRRSRKRVRAVITTELPFLISKEFSAIEVDGAYTMKSSSEVVSNNATAAMHQARWRAL FDQLDSALSEEEKQLETWLSQVKEMQVHCDQGLQHLHYNAILGYPRTEKADSSQKELAVRAAAASIYSTCNFLSSKENVSCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05240			Uncharacterised conserved prot...		Potri.019G058200 [exp]	0	1
AT4G17240			unknown protein		Potri.006G017200 [exp]	4.00	0.9504
AT5G06590			unknown protein		Potri.016G064200 [exp]	4.00	0.9449
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	4.12	0.9598
AT1G64960		HEB1	hypersensitive to excess boron...		Potri.007G055400 [exp]	4.47	0.9496
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.005G209600 [exp]	6.00	0.9411	Pt-RANGAP1.1
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Potri.014G155900 [exp]	6.48	0.9533
AT4G14310			Transducin/WD40 repeat-like su...		Potri.008G169200 [exp]	8.30	0.9272
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	8.36	0.9467
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.011G031200 [exp]	10.09	0.9473	ATK1.2
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	10.39	0.9328

Compare expression of checked genes

Potri.019G058200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.