Plant FIBer expression Database

Potri.019G058300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05230 285 / 8e-93 RING/U-box superfamily protein (.1)
AT2G40640 235 / 3e-73 RING/U-box superfamily protein (.1.2.3)
AT3G19895 169 / 1e-46 RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G085700
[exp]
169 / 2e-46 AT3G19895 707 / 0.0 RING/U-box superfamily protein (.1)
Potri.010G171100
[exp]
155 / 2e-41 AT3G19895 701 / 0.0 RING/U-box superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034237
[exp]
313 / 3e-103 AT5G05230 229 / 2e-71 RING/U-box superfamily protein (.1)
Lus10029029
[exp]
305 / 8e-100 AT5G05230 197 / 2e-59 RING/U-box superfamily protein (.1)
Lus10034201
[exp]
159 / 1e-42 AT3G19895 662 / 0.0 RING/U-box superfamily protein (.1)
Lus10000199
[exp]
79 / 3e-16 AT3G19895 352 / 3e-119 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.019G058300.1 pacid=42773742 polypeptide=Potri.019G058300.1.p locus=Potri.019G058300 ID=Potri.019G058300.1.v4.1 annot-version=v4.1
ATGTCAACAGAGGAAATATCTTTAGTTTCTCCACAAAACGGAATAAATTCACAACTCCTCTTCCAAGACGATCCATTACGATTCAGTTGCACCGGACCGC
CTCCGCAACAACAGCAGCAACGCCGTGTTGGGGATCCCAAAACTCGAGAACTCACCGGTTTTATCGATGACAACAAGCTCTTCTCCGCCACCACTACTGC
AACCGCCACTTCCACCGCCGGCTCCGACCGTTACTTTCCCTCTCACCACCACCACCACCACCAGGATTTCCCGAGGAATGTTTATCAGCGTGAACCGCAG
GGAACTAGTGGAGATGATACCGACGGTGAGGATGATGAAGATGATGAGGAGGACGATGAGGAGGAGGTTGATGACGTAGACGGTGGTGATGGTGATCATG
AGAATGGAGTTGATGTGCTTGTTGCTGCTATTGATTGTAACAGCAAAAACACTAACTGTAACAACAATAACTGTAGTGGAACTATTAGTAATGCTAGTAA
TAGTGTTCATTTGGACAAAATTGGAAATGGAAATGCAAAGCCCAAGCATCTTTCTTCTTTTGGGATTAGTGGGGAAATGGTGAAAGATGGAATTGGTGGT
GGCGGCGGCTTGGGGCAAACAGGGAATAATGCGGTGACGATCGCGGAGGCAGATGGGGAGATGTATTATTCGCAGTATTTGCAGGGGACGGGGGGGTCTG
GTGCTGGTGGAAAGGATATGTGTGTGGAGAATGGTTGTGGATTTAGTGGAAGGAAGGACGTTTCAGCATTTTCGAGTGAGTCTGGAGATTCTTTAAGGGC
TATTTTATCGGACCCTGTTACGGGAGCTTTAATGGATGACGCTATGATATTGCCTTGTGGGCATTCATTTGGAGCTGGTGGAATGCAGCATGTTATCAGA
ATGAAAGTTTGCTACAGTTGTTCACAGTCAATTTCAGAAGACTCAATAGCTCCCAACCTCTCTCTCAGATATGCTGTCCAGGCATTTCAGCGGGAAGAGG
AGTTACAATTTTATCGCTCATCCAAAAGGAGGAGAGAGAGGTTTGACCAGGACAAAGGTGGTTATGGCGATTCAGGGGTCATGGATCCACCAAGGGGTAG
AGGTGTGCAGTTCCCATTTGCTGTGACAGACCGGGTTATTATAAAGGGAAACAAGAGGACACCTCAACGGTTTGTTGGACGGGAGGCTGTTGTGACAACG
CAATGCTTAAATGGATGGTATGTAGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCACTTGCCAAGCTTTCAGATGACCCATCTT
CAAAAACAATATCAACCAAGATTGCCCCAAACTGGCTCTAG
AA sequence
>Potri.019G058300.1 pacid=42773742 polypeptide=Potri.019G058300.1.p locus=Potri.019G058300 ID=Potri.019G058300.1.v4.1 annot-version=v4.1
MSTEEISLVSPQNGINSQLLFQDDPLRFSCTGPPPQQQQQRRVGDPKTRELTGFIDDNKLFSATTTATATSTAGSDRYFPSHHHHHHQDFPRNVYQREPQ
GTSGDDTDGEDDEDDEEDDEEEVDDVDGGDGDHENGVDVLVAAIDCNSKNTNCNNNNCSGTISNASNSVHLDKIGNGNAKPKHLSSFGISGEMVKDGIGG
GGGLGQTGNNAVTIAEADGEMYYSQYLQGTGGSGAGGKDMCVENGCGFSGRKDVSAFSSESGDSLRAILSDPVTGALMDDAMILPCGHSFGAGGMQHVIR
MKVCYSCSQSISEDSIAPNLSLRYAVQAFQREEELQFYRSSKRRRERFDQDKGGYGDSGVMDPPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTT
QCLNGWYVVKTLDNAESVKLQYRSLAKLSDDPSSKTISTKIAPNWL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05230 RING/U-box superfamily protein... Potri.019G058300
[exp]
0 1
AT2G45620 Nucleotidyltransferase family ... Potri.014G073300
[exp]
5.19 0.8125
AT3G06250 FAR1_related FRS7 FAR1-related sequence 7 (.1) Potri.005G023700
[exp]
5.65 0.8230
AT3G19860 bHLH bHLH121 basic Helix-Loop-Helix 121, ba... Potri.009G129600
[exp]
10.00 0.8028
AT5G41950 Tetratricopeptide repeat (TPR)... Potri.011G050600
[exp]
11.40 0.7907
AT2G15695 Protein of unknown function DU... Potri.009G103500
[exp]
15.42 0.7967
AT1G61040 VIP5 vernalization independence 5, ... Potri.004G039500
[exp]
22.09 0.7966
AT3G48120 unknown protein Potri.015G070100
[exp]
23.74 0.7911
AT5G23710 DNA binding;DNA-directed RNA p... Potri.003G033600
[exp]
24.43 0.7076
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.006G013000
[exp]
24.65 0.7849
AT1G22310 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.... Potri.001G312900
[exp]
25.49 0.7934

Potri.019G058300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.