Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56370 1174 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 994 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G28040 664 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G62950 411 / 8e-129 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28650 376 / 1e-114 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G63930 334 / 2e-98 Leucine-rich repeat protein kinase family protein (.1) AT3G51740 318 / 2e-94 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT1G74360 295 / 1e-84 Leucine-rich repeat protein kinase family protein (.1) AT1G12460 265 / 3e-75 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 262 / 6e-73 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G091000 [exp] 1574 / 0 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G137000 [exp] 1130 / 0 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 1106 / 0 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.014G147300 [exp] 719 / 0 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G233600 [exp] 683 / 0 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G114500 [exp] 488 / 1e-157 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G117500 [exp] 485 / 6e-157 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 395 / 1e-121 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 379 / 1e-115 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012877 [exp] 1188 / 0 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 1187 / 0 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022738 [exp] 994 / 0 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10014174 [exp] 985 / 0 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025139 [exp] 960 / 0 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025223 [exp] 958 / 0 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037276 [exp] 553 / 0 AT3G28040 1013 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10035687 [exp] 551 / 0 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10006675 [exp] 433 / 3e-137 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012193 [exp] 339 / 4e-102 AT2G41820 1232 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G058600.1 pacid=42773968 polypeptide=Potri.019G058600.1.p locus=Potri.019G058600 ID=Potri.019G058600.1.v4.1 annot-version=v4.1 ATGTTAAGGGCAAAAGAGTTGCTAAGCTTATTAGTGTTCTTGGTTTTAGCTTTTCAATGTGTGAGATCCCTTAATCCATCATTAAATGATGATGTTTTGG GTCTAATTGTGTTTAAAGCAGACCTTCAAGATCCAATGAGAAAGCTCTCATCTTGGAACCAAGATGACGACACTCCCTGCAACTGGTTCGGTGTCAAGTG CAACCCGAGATCCAACCGGGTTGCTGAGCTCACTCTTGATGGGCTCTCTCTATCAGGTCGGATCGGCCGTGGCCTCTTACAGCTCCAGTTCCTCCACAAG CTCTCTCTATCAAGGAACAACCTTACTGGTAGCATCAATCCTAACCTTACTCGCCTTGAAAGCCTTAGAATCATTGATTTGAGTGAGAACAGCCTCTCCG GGACAATATCGGAGGACTTTTTCAAGGAATGTGCGGCTTTGAGGGATCTTTCTTTGGCTAATAATAAGTTTTCAGGGAAGATTCCAGGTTCTTTGAGCTC ATGTGCTAGTCTCGCATCTATAAACTTGAGTTCGAATCAGTTTACTGGGTCTTTGCCTGCTGGGATTTGGGGTTTGAATGGATTGAGGTCACTTGATTTG TCTGGTAATTTGCTGGATGGTGAGATTCCCAAAGGGATTGAAGTTTTGAACAATTTGAGGAGGATTAACTTAAGCAAGAATCGGTTTAATGGGGAGGTTC CAGATGGGATTGGAAGCTGTTTGTTGTTGAGGTCTGTTGATTTCAGTGAGAATATGCTTTCTGGGCACATTCCAGACACAATGCAGAAGCTTGGCTTGTG TGATTATTTGAGTTTGAGTAGCAACATGTTTACTGGTGAGGTTCCAAACTGGATTGGTGAACTGAATCGCCTGGAGACTTTGGATCTTTCTGGGAATAGA TTTTCGGGTCAGGTTCCAATTTCAATTGGGAAACTTCAATTATTGAAGGTGTTGAATTTGTCTGCAAATGGTTTAAGTGGGAATTTGCCAGAATCTATGG CCAATTGTGGAAACCTTTTGGCTTTGGATTTTAGCCAGAATTTGCTGAGTGGTGACCTTCCTACGTGGATTTTTGGTTCAAGGTCGGAGAAAGTTTTGCA TTTGGAGAATAAGCTTAGTGGAAAATTTAGCTCTGCTCCAAGGCTTCAATTCCTGGATTTATCACACAATGATTTTTCTGGCAAGATTGCATCTTCCATC GGGGTTTTAAGCAGCTTGCAGTTCTTGAATCTGTCAAAAAACTCTCTCTTTGGTCCTGTTCCGGGAACTTTTGGAGATTTGAAGGAATTGGATATTCTTG ATTTGAGTGATAACAAGCTAAATGGTAGCATTCCTACGGAAATTGGAGGAGCTTTTGCTTTGAAGGAACTGAGACTGGAGAGGAACTCACTGTCGGGGCA AATCCCAGATTCAATAGGGAACTGTTCTTCATTAATGACTTTAATCCTATCCCAAAACAACTTGGCTGGAACAATACCTGCAGCAATAGCAAAACTTGGA AACCTAAAAGATGTGGACCTGTCTTTAAACAGCCTCACTGGCAGCCTACCCAAGCAGTTGGCAAATCTTCCCAATCTCATCTCCTTTAACATTTCCCACA ACAATTTGCAAGGTGAACTACCTGCAGGAGTTTTCTTTAACACTATATCACCTTCATCTGTCTCTGGAAATCCATCCCTTTGTGGCGCTGCAGTCAATAA GTCTTGCCCTGCAGTCCTTCCCAAACCCATTGTTCTCAATCCAAACTCTTCTTCTGATTCTACTCCGGGCTCACTTCCTCAAAATCCTGGTCACAAAAGA ATCATTCTAAGCATATCTGCTCTCATTGCCATTGGTGCTGCTGCTGTCATTGTTGTTGGTGTGATTGCCATCACCGTGCTTAATCTCCGTGTTCGGTCAT CAACATCTCGATCTGCAGCTGCTCTCACGTTATCCGCAGGTGATGGCTTTAGTGATTCTCCCACTACAGATGCCAACTCTGGAAAACTTGTCATGTTTAC TGGAAAGCCTGACTTTAGCACAGGAGCACATGCTCTGCTCAACAAGGATTGTGAACTTGGGAGAGGTGGGTTTGGAGCAGTCTACCAGACTGTCCTTAGA GATGGTCATCCCGTTGCAATCAAAAAGCTCACTGTCTCGAGTCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAAGTTAAGAAATTGGGGAAAATCAGGC ACCAAAACCTTGTGGCACTTGAAGGTTATTACTGGACTCAATCCTTGCAGCTTCTCATATATGAGTTTGTCTCTGGTGGTAGTTTGTATAAGCATCTGCA CGAAGGATCAGGCGGTCATTTTCTGTCATGGAATGAGAGGTTCAACATAATTCTAGGGACTGCAAAAAGCTTGGCTCATTTGCACCAGTCTAACATTATC CACTACAACATAAAATCAAGCAATGTCCTTCTTGACAGTTCAGGTGAACCGAAAGTAGGTGATTTTGGCCTAGCAAGGCTGTTGCCAATGCTAGACCGTT ATGTTTTAAGCAGCAAAATTCAGAGTGCGCTTGGCTACATGGCACCAGAATTTGCCTGTAGAACAGTAAAGATAACTGAGAAATGCGACGTGTATGGTTT TGGGGTTTTGGTTCTGGAGATTGTTACTGGCAAGAGACCTGTTGAATACATGGAAGATGATGTGGTTGTGCTTTGTGACATGGTTAGAGGAGCATTGGAG GAAGGCAGGGTGGAAGAATGTGTCGATGGGAGGCTCATGGGGAATTTCCCAGCAGATGAGGTGGTTCCAGTTATGAAGTTGGGTTTGATTTGCACATTGC AAGTTCCTTCAAACCGGCCAGACATGGGAGAAGTAATTAATATATTAGACCTGATCAGGTGTCCTTCAGAGGGACAAGAGGATTCAGGGTGA
AA sequence Show only first row Show all	>Potri.019G058600.1 pacid=42773968 polypeptide=Potri.019G058600.1.p locus=Potri.019G058600 ID=Potri.019G058600.1.v4.1 annot-version=v4.1 MLRAKELLSLLVFLVLAFQCVRSLNPSLNDDVLGLIVFKADLQDPMRKLSSWNQDDDTPCNWFGVKCNPRSNRVAELTLDGLSLSGRIGRGLLQLQFLHK LSLSRNNLTGSINPNLTRLESLRIIDLSENSLSGTISEDFFKECAALRDLSLANNKFSGKIPGSLSSCASLASINLSSNQFTGSLPAGIWGLNGLRSLDL SGNLLDGEIPKGIEVLNNLRRINLSKNRFNGEVPDGIGSCLLLRSVDFSENMLSGHIPDTMQKLGLCDYLSLSSNMFTGEVPNWIGELNRLETLDLSGNR FSGQVPISIGKLQLLKVLNLSANGLSGNLPESMANCGNLLALDFSQNLLSGDLPTWIFGSRSEKVLHLENKLSGKFSSAPRLQFLDLSHNDFSGKIASSI GVLSSLQFLNLSKNSLFGPVPGTFGDLKELDILDLSDNKLNGSIPTEIGGAFALKELRLERNSLSGQIPDSIGNCSSLMTLILSQNNLAGTIPAAIAKLG NLKDVDLSLNSLTGSLPKQLANLPNLISFNISHNNLQGELPAGVFFNTISPSSVSGNPSLCGAAVNKSCPAVLPKPIVLNPNSSSDSTPGSLPQNPGHKR IILSISALIAIGAAAVIVVGVIAITVLNLRVRSSTSRSAAALTLSAGDGFSDSPTTDANSGKLVMFTGKPDFSTGAHALLNKDCELGRGGFGAVYQTVLR DGHPVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVALEGYYWTQSLQLLIYEFVSGGSLYKHLHEGSGGHFLSWNERFNIILGTAKSLAHLHQSNII HYNIKSSNVLLDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALE EGRVEECVDGRLMGNFPADEVVPVMKLGLICTLQVPSNRPDMGEVINILDLIRCPSEGQEDSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56370			Leucine-rich repeat protein ki...		Potri.019G058600 [exp]	0	1
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	6.32	0.7890
AT3G09730			unknown protein		Potri.006G130600 [exp]	6.48	0.7388
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.010G051400 [exp]	6.70	0.7891
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.003G102400 [exp]	8.71	0.7974
AT1G73620			Pathogenesis-related thaumatin...		Potri.012G047800 [exp]	9.94	0.8053
AT4G23490			Protein of unknown function (D...		Potri.001G100700 [exp]	10.00	0.7668
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.006G071500 [exp]	10.95	0.7849
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.014G158400 [exp]	11.00	0.8135
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.017G081100 [exp]	12.24	0.7917
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	13.85	0.7901

Compare expression of checked genes

Potri.019G058600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.