Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40660 396 / 4e-137 Nucleic acid-binding, OB-fold-like protein (.1) AT4G13780 162 / 9e-44 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) AT3G59980 121 / 1e-31 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057700 [exp] 171 / 6e-47 AT4G13780 1255 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.001G317500 [exp] 170 / 1e-46 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.017G000200 [exp] 116 / 7e-30 AT3G59980 276 / 6e-93 Nucleic acid-binding, OB-fold-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029026 [exp] 485 / 8e-172 AT2G40660 424 / 1e-147 Nucleic acid-binding, OB-fold-like protein (.1) Lus10034239 [exp] 467 / 2e-164 AT2G40660 413 / 3e-143 Nucleic acid-binding, OB-fold-like protein (.1) Lus10022571 [exp] 174 / 6e-48 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10016658 [exp] 174 / 8e-48 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10027077 [exp] 114 / 7e-29 AT3G59980 284 / 4e-96 Nucleic acid-binding, OB-fold-like protein (.1) Lus10025611 [exp] 111 / 2e-27 AT3G59980 280 / 3e-94 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF01588 [poplar] [flax] tRNA_bind Putative tRNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G058700.2 pacid=42773436 polypeptide=Potri.019G058700.2.p locus=Potri.019G058700 ID=Potri.019G058700.2.v4.1 annot-version=v4.1 ATGGGTTTGCAAAGAAAGCAAATAATATCATCAGCTCTTAGCAAGCACCTCTCTTTATCTCCTGAAGCTCCTTCAGGTGACCTTGGAGAGTATGATATTA AGAGTTTGTACTTGAACATTTTGAAGTCATCAGGAAAAAGGTCCCCATCAAAAGAAAGTGAGGAGGTGATGAAATGGATAAGCTTTGCAGAGATTTTTCC AATAGATTCTCCGACATGCTTTGATGCTCTCAGTGGATTGAACAAAGACTTGGCTCTGAATTCTGTGCTTTTGGGCAATGGATTGACACCCTCTGAAGCT GATATTATAGTTTTTTCAGTAATACATTCATCTGTGATAGGCCTTTCACATTTAGAGAGGGAAAAGTTGGTGCATGTAATGAGATGGATGGATTACATCC AGAACAAGGTAGACTTTGGGAAACTATTTGAAAAGGTTTTGCTAGAAAAGGGTGCATTCGAACTTCAGTTGCAGGGAATAAAAGGTGATGCTAAATCAGA AATAGATACAAATGCAAAAAAGACCGTGGAAAACACCAAGAACAAAGAAAAATCGGAAGCAGACCTAAGCATGAAGAAAAGTGATGTTGGGAATAAGTCT ACTGGAAAAAAAGAATCTGCTCAAGAGAAGAAGAAACCATCTGAAACAGAAGCAGGTGAGAAAGACAAAGAACTAAGTGTCAGTTTACTGAATATACAAG TTGGCCTTATTCGCAAAGCATGGAAGCATCCCTCTGCTGACAGTTTACTGGTTGAGGAGATAGATATTGGAGATGCTAAATTGAGGCAGGTAGTCAGTGG TTTGGCGAAGTTTTATAGTCCAGATGACTTGACGAACCGCCGAGTTGTCTTGATTACAAATGTAAAACCTGGAAAGCTACGAGATGTGATGTCAGAAGGC CTGGTCCTTTGTGCATCTAATGAGGATCACACCATTGTAGAGCCTTTGCTGCCTCCAGAAGGTGCCAAAGTTGGAGAACGTGTGTCATTCTTGGGGATTG ACGGTAAGCCAGAAGATGTTCTTAACCCAAAAAAGAAGCAGTTAGAGAAAATAACACCGAATCTTTTCTCGGATGATAAGGGTGTGGCCACATTTAAGGG AATACCATTTATGACATCTGGTGGGCCGTGTACATCATCCATTCCGAAGGCAAGCATCAAATGA
AA sequence Show only first row Show all	>Potri.019G058700.2 pacid=42773436 polypeptide=Potri.019G058700.2.p locus=Potri.019G058700 ID=Potri.019G058700.2.v4.1 annot-version=v4.1 MGLQRKQIISSALSKHLSLSPEAPSGDLGEYDIKSLYLNILKSSGKRSPSKESEEVMKWISFAEIFPIDSPTCFDALSGLNKDLALNSVLLGNGLTPSEA DIIVFSVIHSSVIGLSHLEREKLVHVMRWMDYIQNKVDFGKLFEKVLLEKGAFELQLQGIKGDAKSEIDTNAKKTVENTKNKEKSEADLSMKKSDVGNKS TGKKESAQEKKKPSETEAGEKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDIGDAKLRQVVSGLAKFYSPDDLTNRRVVLITNVKPGKLRDVMSEG LVLCASNEDHTIVEPLLPPEGAKVGERVSFLGIDGKPEDVLNPKKKQLEKITPNLFSDDKGVATFKGIPFMTSGGPCTSSIPKASIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40660			Nucleic acid-binding, OB-fold-...		Potri.019G058700 [exp]	0	1
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.006G008800 [exp]	4.24	0.8302	Pt-PAC1.1
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.001G224100 [exp]	10.72	0.8099	Pt-PAG1.1
AT1G47640			unknown protein		Potri.002G130100 [exp]	10.77	0.8115
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Potri.006G141300 [exp]	16.15	0.8014
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.002G127900 [exp]	24.00	0.8038
AT4G27380			unknown protein		Potri.001G406900 [exp]	24.45	0.6841
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.014G069800 [exp]	28.00	0.8111	PBF1.2
AT1G22520			Domain of unknown function (DU...		Potri.013G105766 [exp]	29.56	0.7603
AT2G45060			Uncharacterised conserved prot...		Potri.014G058700 [exp]	32.84	0.7380
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.008G065200 [exp]	34.95	0.7864

Compare expression of checked genes

Potri.019G058700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.