Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40730 1172 / 0 CTEXP cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) AT1G71410 75 / 1e-13 ARM repeat superfamily protein (.1) AT1G22870 71 / 3e-12 Protein kinase family protein with ARM repeat domain (.1) AT5G66850 47 / 4e-05 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090500 [exp] 1395 / 0 AT2G40730 1144 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Potri.013G098700 [exp] 81 / 2e-15 AT1G71410 1177 / 0.0 ARM repeat superfamily protein (.1) Potri.005G162201 [exp] 44 / 3e-05 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029025 [exp] 1240 / 0 AT2G40730 1221 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Lus10034240 [exp] 1228 / 0 AT2G40730 1216 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.019G059200.1 pacid=42773366 polypeptide=Potri.019G059200.1.p locus=Potri.019G059200 ID=Potri.019G059200.1.v4.1 annot-version=v4.1 ATGCTGAGATTTTTAAAAGGAGTGGTAGGTGGTGCATCTGGTACTGGGCTTAAAGATCTCCCTTACAATATCGGCGATCCTTATCCCTCCGCTTGGGGCT CCTGGACTCACCATCGCGGCACCTCCTCCAAGGATGATGATGGATCTCCGGTGTCCATCTTTTCTTTTTCTGCAAGTAACGCACAGGATGCCCATTTAGC TGCTGCTCGTAATGGTGTCAAGCGTCTTCGTACTGTCAGACATCCAAATATTCTGTCATTTCTTCACAGTACTGAAGTTGAAAGTGTTGAAGGTTCTAGC TCGAGAATTACTATTTATATAGTAACTGAGCCTGTTATGCCGCTATCTGAGAAGATTAAGGAACTAGGTTTAGAAGGAACACAAAGGGATGAGTATTACG CTTGGGGGCTGAACCAGATAGCCAAAGCTGTGAGCTTTTTGAATAATGATTGTAAACTTGTTCACGGTAATGTTTGTTTGGCCAGTGTCGTTGTCACACC AACATTAGACTGGAAGTTGCATGCTTTTGATGTTCTATCCGAGTTTGACGGAAGCAATGGGAATGCAACCGGACCAATGCTGCAATATGAATGGCTTATT GGATCACAATATAAACCAATAGAGTTGGCCAAGTCTGATTGGGTGGCAATCAGAAAATCTCCTCCTTGGGCCATTGATTCTTGGGGCTTGGGATGTCTTA TATATGAACTATTTACTGGTATGAAGTTGGGGAAAACAGAAGAGCTGCGTAACACTGCTTCCATTCCAAAGTCTTTACTTCAGGATTATCAGCGCCTATT GAGTTCTATGCCTTCTCGCAGGATGAACACAGCAAAGCTTCTAGAAAATAGTGAATACTTCCAGAATAAGTTGGTGGACACCATACATTTTATGGAAATT CTTACTTTGAAAGACAGTGTTGAGAAGGACACCTTCTTCCGCAAACTTCCAAATTTAGCAGAGCAACTTCCTCGCCAAATTGTACTGAAAAAGTTACTTC CTTTATTAGCTTCTGCCCTTGAATTTGGTTCTGCTGCTGCCCCTGCTTTGACTGCGTTGTTGAAAATGGGTTCTTGGCTTTCAGCTGAAGAATTTAGTGT CAAGGTGTTACCGACTATTGTGAAGCTTTTTTCCTCCAATGATCGAGCTATTCGTGTTAGTCTCCTGCAACATATTGATCAATTTGGAGACTCATTGTCA GCACAAGTAGTCGATGAGCAAGTTTACTCTCATGTTGCTACCGGGTTCTCTGATACATCTGCTTTGCTTCGTGAATTGACTCTTAAATCCATGCTGGTTT TGGCGCCTAAGCTTTCTCAACGTACTATTTCAGGCTCCTTGTTGAAATATCTTTCAAAGTTACAGGTTGATGAAGAGCATGCAATTAGAACAAATACCAC CATATTACTTGGGAATATCGCAATCTATTTGAATGAAGGGACAAGGAAGAGAGTTTTAATTAATGCTTTTACAGTCCGTGCACTGCGTGATACTTTTCCT CCTGCCAGAGGAGCAGGAGTAATGGCTTTGTGTGCCACTAGTTCTTATTATGATGTCACTGAGATCGCAACTCGGATTCTTCCAAATGTTGTTGTACTTA CCATTGATCCTGACAGTGATGTTCGATCAAAATCGTTTCAAGCAGTTGAACAGTTTATGCAAATAGTGAAGCAATACCATGAGAAGACAAATGTTGGAGA TACAACAGCTGCAAGCACAAGAATCTCATCAATACCAGAAAATGCTAGTTTACTTGGATGGGCCATGAGCTCCTTGACAATCAAAGGTAAACCTTTGGAA CAAGCTCCACTTGCTCCTGCAAATTCTGGCTCCCCTCTATCTTCCACAACCTCCAATGCCAACTCAGTGATGGACTCTCCAAGTATAGCAGCAGTCCAGA TAAATTCCAGCACAGACTTGGCTGATCAACCTGTACCGGATTCCCCTCCTTCAACAGATGGCTGGGGGGAAATTGAAAATGGAATTCATGAAGAGCAGGG CAGTGACAAAGATGGGTGGGATGATATTGAACCTTTTGAAGAGCCAAAGCCTTCTCCAGCTCTTGTGAACATTCAAGCAGCTCAAAAGCGGCCGGTCTCA CAGCCAGTTTCTCAGCATAAAGCGCAAGCTACAAGTTTGCGACCAAAAAGTACAGTGAAGGTGACAAATGATGAAGATGATGATTTATGGGGTTCTATAG CTGCCCCTGCTCCAAAAACCACGACAAGACCTTTGAATGTCAAATCAGCTACAGCACTTGATGATGATGACCCCTGGGCTGCTATCGCTGCTCCTCCGCC TACTACTAGGGCCAAACCATTGGTAGCTGGTAGAGGCCGAGGTAAACCTGCTGCTTCAAAATTGGGCGCACAAAGGATAAACCGGACGTCCTCATCTGGG ATGTAA
AA sequence Show only first row Show all	>Potri.019G059200.1 pacid=42773366 polypeptide=Potri.019G059200.1.p locus=Potri.019G059200 ID=Potri.019G059200.1.v4.1 annot-version=v4.1 MLRFLKGVVGGASGTGLKDLPYNIGDPYPSAWGSWTHHRGTSSKDDDGSPVSIFSFSASNAQDAHLAAARNGVKRLRTVRHPNILSFLHSTEVESVEGSS SRITIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLNQIAKAVSFLNNDCKLVHGNVCLASVVVTPTLDWKLHAFDVLSEFDGSNGNATGPMLQYEWLI GSQYKPIELAKSDWVAIRKSPPWAIDSWGLGCLIYELFTGMKLGKTEELRNTASIPKSLLQDYQRLLSSMPSRRMNTAKLLENSEYFQNKLVDTIHFMEI LTLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFSVKVLPTIVKLFSSNDRAIRVSLLQHIDQFGDSLS AQVVDEQVYSHVATGFSDTSALLRELTLKSMLVLAPKLSQRTISGSLLKYLSKLQVDEEHAIRTNTTILLGNIAIYLNEGTRKRVLINAFTVRALRDTFP PARGAGVMALCATSSYYDVTEIATRILPNVVVLTIDPDSDVRSKSFQAVEQFMQIVKQYHEKTNVGDTTAASTRISSIPENASLLGWAMSSLTIKGKPLE QAPLAPANSGSPLSSTTSNANSVMDSPSIAAVQINSSTDLADQPVPDSPPSTDGWGEIENGIHEEQGSDKDGWDDIEPFEEPKPSPALVNIQAAQKRPVS QPVSQHKAQATSLRPKSTVKVTNDEDDDLWGSIAAPAPKTTTRPLNVKSATALDDDDPWAAIAAPPPTTRAKPLVAGRGRGKPAASKLGAQRINRTSSSG M

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	0	1
AT4G33380			unknown protein		Potri.014G031900 [exp]	1.41	0.7922
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.007G013900 [exp]	2.82	0.7491	GMD1.1
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.015G128600 [exp]	3.00	0.7474
AT3G61790			Protein with RING/U-box and TR...		Potri.002G171500 [exp]	8.12	0.7390
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	11.22	0.7282
AT2G23140			RING/U-box superfamily protein...		Potri.005G144700 [exp]	11.83	0.7007
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Potri.019G078700 [exp]	14.69	0.6495
AT3G43220			Phosphoinositide phosphatase f...		Potri.018G063700 [exp]	15.49	0.6996
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	16.43	0.6845	CEF.1
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.001G133300 [exp]	18.16	0.7432	PCBERp4

Compare expression of checked genes

Potri.019G059200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.