Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40740 168 / 2e-49 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT4G11070 98 / 4e-23 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT4G23810 94 / 2e-21 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT5G24110 90 / 3e-20 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT2G46400 89 / 7e-20 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT4G31550 86 / 1e-18 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT1G29280 84 / 4e-18 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G56400 84 / 6e-18 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G24570 83 / 1e-17 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT2G23320 82 / 2e-17 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090400 [exp] 432 / 1e-151 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.012G031700 [exp] 102 / 5e-24 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.003G138600 [exp] 100 / 2e-23 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.001G092900 [exp] 97 / 3e-22 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.014G096200 [exp] 93 / 9e-21 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.018G008500 [exp] 90 / 7e-20 AT4G31550 315 / 1e-106 WRKY DNA-binding protein 11 (.1.2) Potri.002G168700 [exp] 90 / 7e-20 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.005G141400 [exp] 89 / 2e-19 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1) Potri.018G139300 [exp] 87 / 4e-19 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029022 [exp] 142 / 8e-40 AT2G40740 157 / 8e-47 WRKY DNA-binding protein 55 (.1.2) Lus10001062 [exp] 100 / 1e-23 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2) Lus10039331 [exp] 100 / 4e-23 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2) Lus10032372 [exp] 99 / 8e-23 AT4G11070 234 / 4e-75 WRKY family transcription factor (.1.2) Lus10023099 [exp] 99 / 1e-22 AT4G11070 235 / 3e-75 WRKY family transcription factor (.1.2) Lus10001902 [exp] 95 / 1e-21 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10041600 [exp] 91 / 6e-20 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10034245 [exp] 87 / 5e-19 AT2G40740 108 / 6e-28 WRKY DNA-binding protein 55 (.1.2) Lus10006261 [exp] 86 / 2e-18 AT2G23320 273 / 2e-90 WRKY DNA-binding protein 15 (.1.2) Lus10020136 [exp] 86 / 2e-18 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G059300.2 pacid=42774565 polypeptide=Potri.019G059300.2.p locus=Potri.019G059300 ID=Potri.019G059300.2.v4.1 annot-version=v4.1 ATGTTCCCATCAAAGATCATCCAAAAAAGCACTAAAAAACAACAGGAAACCATGGATGACACCATCTCTCTTATTCTTCATGGGTGCAAGCTAGCTAAAG ACCTTGAATTAAGCCTAGCAAACTCAGCCAGCCAACCAGAAACTCTATCAAGGTCGTGTGAGGAAATCATTAGGGTTTTCGCTAATGCCAAGGAGAGGCT ACATGTTCATCAACTAGGCACCACTTTCTACCCTCATCCTATGTTGTTTCGTGAGCCACAGGACTTACAGCAACAGCAGAATATTGATCCTATCTTACAG GAATGGCTAGGGACTAGTTGCACATCGGCGGAGACGTTGTTTCATCAAACGCAAGGCGTTATGGCTGAGAGTGCCTTGGGATTGATTGAGAGTAAGATAG GTGGAGGAATACAGATGGGATCAGGAGGTCTAGCTATTGAATCAGGTAGCAGATCAGATGTCCAGGCAGTGGATGCATCAGATTCTGGCAGAGGTTCTTC ATCATCCTCAAAAAGACCGCGAATAAGGAATGATGATGCCGAGAAACGAACGGTGAGGGTACCTGCTCAACAGTTCGGCAATACTGAAATCCCACCGGAA GATGGTTTCTCTTGGAGGAAATATGGGCAGAAAGAGATTCTGGGGTCAAAGTTTCCGAGGGCCTACTACAGGTGCACCAACCAAAACTTGTACCATTGCC CAGCCAAGAAACAAGTTCAGCGACTTGATGACGATCCCTGCAGATTGGAAGTAGTATACCGTGGCGAGCACACTTGCCACTTGTCTGCCACCGCACCATC AGCTCCACCACCAGCACCGGGAATTACTCAAGAGATGGCCCAAACTATGATTGGTCAGCCTCAACCATCCACAGCAACTTCTCTAGGCAGATGGGTACTG GAATTTCGTCTGGGTCCTGGAGGTGGTGCTGGCAGCAGCAGCAGCAGCAGCATGGCTGCAGGTAGTAGCGGCGGTGCGGCTGGTCCCTCCACTGTTGGTC GATATGGTAAAGAAGCTGATTACCCTATAACAGATATGGCTGATGCCATGTTTAATTCTGGCAGTAGTAGCACCAATAGCATGGAACTTATTTTCCCTTC CATCTCGGAAGAAAAAAGAGATCAGCCAAGCGACAAAAACAATTGA
AA sequence Show only first row Show all	>Potri.019G059300.2 pacid=42774565 polypeptide=Potri.019G059300.2.p locus=Potri.019G059300 ID=Potri.019G059300.2.v4.1 annot-version=v4.1 MFPSKIIQKSTKKQQETMDDTISLILHGCKLAKDLELSLANSASQPETLSRSCEEIIRVFANAKERLHVHQLGTTFYPHPMLFREPQDLQQQQNIDPILQ EWLGTSCTSAETLFHQTQGVMAESALGLIESKIGGGIQMGSGGLAIESGSRSDVQAVDASDSGRGSSSSSKRPRIRNDDAEKRTVRVPAQQFGNTEIPPE DGFSWRKYGQKEILGSKFPRAYYRCTNQNLYHCPAKKQVQRLDDDPCRLEVVYRGEHTCHLSATAPSAPPPAPGITQEMAQTMIGQPQPSTATSLGRWVL EFRLGPGGGAGSSSSSSMAAGSSGGAAGPSTVGRYGKEADYPITDMADAMFNSGSSSTNSMELIFPSISEEKRDQPSDKNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Potri.019G059300 [exp]	0	1
AT4G23880			unknown protein		Potri.003G140200 [exp]	5.09	0.9476
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G055000 [exp]	7.00	0.9483
AT4G23880			unknown protein		Potri.003G140233 [exp]	7.74	0.9461
					Potri.002G247600 [exp]	10.39	0.9456
AT4G23880			unknown protein		Potri.003G140266 [exp]	10.95	0.9434
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G268900 [exp]	14.24	0.9446
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.016G003000 [exp]	15.16	0.9457
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.006G268700 [exp]	21.42	0.9194
AT5G17680			disease resistance protein (TI...		Potri.019G068300 [exp]	21.49	0.9096
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G004800 [exp]	21.81	0.9357

Compare expression of checked genes

Potri.019G059300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.