Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40760 553 / 0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT1G09280 113 / 9e-27 unknown protein AT1G17850 102 / 2e-23 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011300 [exp] 108 / 3e-25 AT1G09280 773 / 0.0 unknown protein Potri.015G029600 [exp] 107 / 5e-25 AT1G17850 528 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029020 [exp] 580 / 0 AT2G40760 568 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10034243 [exp] 282 / 8e-92 AT2G40760 262 / 4e-84 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10008045 [exp] 102 / 6e-23 AT1G09280 748 / 0.0 unknown protein Lus10017986 [exp] 99 / 4e-22 AT1G17850 496 / 7e-174 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Lus10041981 [exp] 99 / 5e-22 AT1G17850 503 / 1e-176 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00581 [poplar] [flax] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Potri.019G059400.1 pacid=42774488 polypeptide=Potri.019G059400.1.p locus=Potri.019G059400 ID=Potri.019G059400.1.v4.1 annot-version=v4.1 ATGCTCAGGGGTTGTTCACCTCCATTGCTCTTACTGAGGATGCTGTCATCATCACCTCAGACCTTAAACCCTAACCCTACATTTCTAACTCCTATGAAAT CAACCACCCAAACCCTTAATTCATCGCAAAATCATAATCACCCTCTACTCTTCTCTAATAACCCTAAGGTCTCTCTTTCAAATTCACACAAATTACCTCA AAACATGACAGTCTCCAGCTGCTTCTCTGGGTCTCCTAGCACAGACCAACTTAGCATTTCGGGCGCACCCGGATCCAATAACTCGAACCCAGAATCAACT CTTGTAGTGGTTTCTTTCTACAAATTCGCTGATTTTCCAGACTATGCTGACATGAGAAAGCCCTTAAAAGAGCTTTGTGAAGAATTGCGTGTTTCAGGTG GGATCATTCTTGCACCAGAGGGAATTAATGGCAGTATCTGTGGGACTTGGGAATCAGTGGAGAATGTTCTTGGATTCATCCAAAGTGATGACAGGCTAAA GGGGTTAAGACAAGTGGAGTCACCTGTTAGTCCCGAGGAGGAAGCTATCCATCATGGACACACAAGTGGTTCTCCTCTTGCTGCAGGGGAAGATGCACCC TTCCGCTGGGATCATGTGAGGGTCAAGTTGAAAAAGGAGATTGTTACTCTTGGAATGCCCTCAATCTCACCTAATGAAAGGGTTGGGAAGTATGTGAAGC CAAGGGACTGGAATGCATTGATTAGTGATCCGGATACAGTGGTAGTTGATGTGCGAAATAACTACGAAACTAGAATTGGGAAGTTCAAAGGAGCTGTTGA TCCTTGTACCTCAGCATTTCGTGAATTTCCATCTTGGGTGGGAGATGAGTTCCAACATGCAGAAACTGATGAGGTGAACTGTTCTGGCGGAAGCACTGAT AAAGAAACAAAGAGCCCAAACAAGAAAATGCCTCAGAAAGTTGCAATGTACTGCACAGGAGGAATTCGATGTGAAAAGGCTTCGAGTTTTCTCCTAAATA AAGGTTTCAAAGAGGTTTATCATTTGGAGGGTGGGATTCTGAAATACCTTGAGGAAATTCCAAAGTCAGAGAGCTTGTGGGAGGGTGAGTGCTTTGTTTT CGACAAACGGGTCTCAGTGGAGCATGGTTTGGAACAGGGAACTTTCAAGCTTTGCTATGGATGTAAGCAACCAGTTAGTGACGCTGACATGGAAGCACCG GAGTGGGAATATGGAGTTTCTTGTCCCTATTGTGTTTCATCAAAATCTGAAGAAGAGAAGGAGAGGGCAAGAGCTCGGCAAAGGCAGTTTGAAACTTGGG GCGTTATTGGGGGTCCTGATAAGGGTCGCCGACCCACGTTTAAACCAGATAGTAACAACAGTGATGCTAAACAGCAGCTTTCAAGTACATTTTAG
AA sequence Show only first row Show all	>Potri.019G059400.1 pacid=42774488 polypeptide=Potri.019G059400.1.p locus=Potri.019G059400 ID=Potri.019G059400.1.v4.1 annot-version=v4.1 MLRGCSPPLLLLRMLSSSPQTLNPNPTFLTPMKSTTQTLNSSQNHNHPLLFSNNPKVSLSNSHKLPQNMTVSSCFSGSPSTDQLSISGAPGSNNSNPEST LVVVSFYKFADFPDYADMRKPLKELCEELRVSGGIILAPEGINGSICGTWESVENVLGFIQSDDRLKGLRQVESPVSPEEEAIHHGHTSGSPLAAGEDAP FRWDHVRVKLKKEIVTLGMPSISPNERVGKYVKPRDWNALISDPDTVVVDVRNNYETRIGKFKGAVDPCTSAFREFPSWVGDEFQHAETDEVNCSGGSTD KETKSPNKKMPQKVAMYCTGGIRCEKASSFLLNKGFKEVYHLEGGILKYLEEIPKSESLWEGECFVFDKRVSVEHGLEQGTFKLCYGCKQPVSDADMEAP EWEYGVSCPYCVSSKSEEEKERARARQRQFETWGVIGGPDKGRRPTFKPDSNNSDAKQQLSSTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40760			Rhodanese/Cell cycle control p...		Potri.019G059400 [exp]	0	1
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	6.08	0.9204
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.005G175400 [exp]	8.00	0.9014
AT1G15710			prephenate dehydrogenase famil...		Potri.001G201100 [exp]	8.94	0.9171
AT4G32605			Mitochondrial glycoprotein fam...		Potri.008G015600 [exp]	12.48	0.9095
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Potri.004G000600 [exp]	13.56	0.8878
AT2G13690			PRLI-interacting factor, putat...		Potri.005G058700 [exp]	14.83	0.8881
AT3G53580			diaminopimelate epimerase fami...		Potri.006G102700 [exp]	16.30	0.8924
AT5G24650			Mitochondrial import inner mem...		Potri.015G000600 [exp]	21.56	0.8820
AT2G21340			MATE efflux family protein (.1...		Potri.009G122600 [exp]	21.90	0.9100
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Potri.006G280100 [exp]	22.44	0.8803

Compare expression of checked genes

Potri.019G059400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.