Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 428 / 2e-139 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 421 / 1e-135 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 307 / 2e-93 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 303 / 9e-92 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 294 / 2e-88 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20270 271 / 9e-81 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 270 / 3e-79 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 262 / 2e-77 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 263 / 3e-77 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65700 256 / 4e-75 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G060400 [exp] 946 / 0 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G059600 [exp] 946 / 0 AT4G08850 734 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060042 [exp] 939 / 0 AT4G08850 733 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060168 [exp] 937 / 0 AT4G08850 735 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060084 [exp] 904 / 0 AT4G08850 724 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060650 [exp] 898 / 0 AT4G08850 587 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G122500 [exp] 896 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 884 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 884 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008712 [exp] 424 / 7e-138 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 416 / 3e-137 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 420 / 9e-136 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020935 [exp] 416 / 1e-134 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 405 / 2e-129 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 401 / 2e-128 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 377 / 3e-120 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 377 / 1e-119 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 350 / 1e-109 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 315 / 4e-97 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G059550.1 pacid=42774249 polypeptide=Potri.019G059550.1.p locus=Potri.019G059550 ID=Potri.019G059550.1.v4.1 annot-version=v4.1 ATGCTTTCCAATCTTCAAATCCTTAATTTAGCATCTAATAATCTGAGTGGATTGATTCCAAAACAACTTGGGGAATGCTCGAATTTACTGTTGCTGAACC TCAGCGGTAATAAATTTAGAGAAAGCATTCCAGGTGAGATAGGCTTTCTACTTTCTCTTCAAGATCTTGATCTTAGCTGCAATTTCCTGACTCGAGATAT ACCGCGGGAACTTGGGCAACTGCAGAAGTTGGAAACTCTGAATGTCTCCCACAACATGCTTTCTGGACGGATTCCGAGCACTTTCAAAGACATGCTAAGC TTAACAACTGTGGATATCTCATCCAATAAGCTACAAGGCCCCATTCCCGATATCAAAGCCTTCCACAACGCTTCATTTGAGGCATTAAGGGATAATATGG GTATATGTGGCAACGCCAGTGGTCTGAAGCCGTGCAATCTTCCAACAAGCAGCAAAACTGTTAAGAGAAAGAGCAACAAGCTTGTGGTTTTGATTGTACT CCCTCTTTTAGGAAGCTTGCTTTTAGTGTTTGTTGTGCTTGGAGCTTTATCCATTCTCTGCAAAAGAGCTAGGAAGAGAAACGCTGAGCCAGAAAATGAA CAAGATCGAAACATGTTCACGATATTGGGCCATGATGGGAAGAAGTTCTATGAGAATATCGTTGAAGCTACAGAGGAATTCAACTCCAACTACTGCATTG GCGAAGGAGGATATGGAACTGTTTATAAAGCAGTGATGCCAACAGAACAAGTGGTCGCTGTGAAGAAACTTCACCGGTCACAAACAGAAAAGTTGTCCGA TTTTAAGGCTTTTGAAAAGGAAGTTTGTGTGCTGGCAAATATTCGACATCGAAATATTGTGAAAATGTATGGATTTTGCTCACATACAAAGCATTCTTTT TTGGTTTACGAGTTCATAGAAAGAGGAAGCTTGAGAAAGATTATAAGCAGTGAGGAACAAGCAATTGAGTTCGATTGGACGAAAAGGCTAAACGTTGTGA AAGGGGTGGGTGGAGCTTTATCCTATCTACACCATTCTTGCTCTCCTCCGATCATTCATCGAGACATTACCAGCAATAATATCCTTCTGGACTTGGAATA TGAAGCACACGTCTCCGACTTTGGCACCGCTAGACTGTTGATGCCTGACTCATCCAATTGGACCTCATTTGCAGGTACCTTTGGATATACTGCTCCAGAG CTAGCTTACACAATGAAGGTGACTGAAAAATGCGATGTCTATAGCTTCGGAGTGGTAACAATGGAGGTGATGACAGGAAGGCACCCCGGCGATCTCATTT CAGCACTCTTATCACCAGGATCTTCGTCGTCATCATCGATGCCACCGATTGCTCAACATGCACTATTGAAGGATGTGTTAGACCAACGCATCTCGCTTCC TAAAAAAGGAGCAGCAGAGGGCGTTGTCCACATGATGAAAATTACACTTGCATGCTTGCATCCCAATCCCCAATCTCGGCCTACAATGGAAAAAATTTCT TTCGAGCTTACAACTAAGTGGCCTCCACTGCCTCAGGCATTCGGCACAATAAGTTTGGGAGATCTCTTCTCATAG
AA sequence Show only first row Show all	>Potri.019G059550.1 pacid=42774249 polypeptide=Potri.019G059550.1.p locus=Potri.019G059550 ID=Potri.019G059550.1.v4.1 annot-version=v4.1 MLSNLQILNLASNNLSGLIPKQLGECSNLLLLNLSGNKFRESIPGEIGFLLSLQDLDLSCNFLTRDIPRELGQLQKLETLNVSHNMLSGRIPSTFKDMLS LTTVDISSNKLQGPIPDIKAFHNASFEALRDNMGICGNASGLKPCNLPTSSKTVKRKSNKLVVLIVLPLLGSLLLVFVVLGALSILCKRARKRNAEPENE QDRNMFTILGHDGKKFYENIVEATEEFNSNYCIGEGGYGTVYKAVMPTEQVVAVKKLHRSQTEKLSDFKAFEKEVCVLANIRHRNIVKMYGFCSHTKHSF LVYEFIERGSLRKIISSEEQAIEFDWTKRLNVVKGVGGALSYLHHSCSPPIIHRDITSNNILLDLEYEAHVSDFGTARLLMPDSSNWTSFAGTFGYTAPE LAYTMKVTEKCDVYSFGVVTMEVMTGRHPGDLISALLSPGSSSSSSMPPIAQHALLKDVLDQRISLPKKGAAEGVVHMMKITLACLHPNPQSRPTMEKIS FELTTKWPPLPQAFGTISLGDLFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G059550 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G059600 [exp]	1.41	0.9361
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G060400 [exp]	1.73	0.9061
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G060042 [exp]	2.44	0.9091
AT1G35710			Protein kinase family protein ...		Potri.019G120700 [exp]	10.95	0.7590
ATCG00690		PSBTC, ATCG0069...	photosystem II reaction center...		Potri.011G113800 [exp]	135.47	0.6181
AT4G16515		RGF6	root meristem growth factor 6,...		Potri.007G077300 [exp]	148.71	0.6146
AT2G45520			unknown protein		Potri.014G072400 [exp]	258.41	0.5736

Compare expression of checked genes

Potri.019G059550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.