Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40770 419 / 5e-135 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) AT5G43530 98 / 2e-22 Helicase protein with RING/U-box domain (.1) AT5G22750 92 / 2e-20 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT1G05120 92 / 2e-20 Helicase protein with RING/U-box domain (.1) AT1G02670 90 / 8e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G05130 85 / 5e-18 DNA/RNA helicase protein (.1) AT1G61140 84 / 7e-18 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT3G20010 82 / 6e-17 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G50410 81 / 1e-16 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT2G02090 80 / 2e-16 CHA19, ETL1, CHR19 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G060126 [exp] 631 / 0 AT2G40770 414 / 4e-133 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060900 [exp] 617 / 0 AT2G40770 1921 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060300 [exp] 561 / 0 AT2G40770 360 / 6e-114 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060210 [exp] 411 / 1e-146 AT2G40770 292 / 4e-91 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.004G189400 [exp] 96 / 8e-22 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.014G154600 [exp] 94 / 3e-21 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.003G083400 [exp] 94 / 5e-21 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.007G000700 [exp] 88 / 4e-19 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.011G046400 [exp] 87 / 9e-19 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012867 [exp] 412 / 2e-131 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10030512 [exp] 319 / 1e-104 AT2G40770 445 / 2e-139 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10043365 [exp] 97 / 3e-22 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 92 / 2e-20 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10041008 [exp] 90 / 1e-19 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10030044 [exp] 87 / 8e-19 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10013452 [exp] 87 / 1e-18 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10018465 [exp] 86 / 3e-18 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10039001 [exp] 86 / 4e-18 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10019523 [exp] 82 / 4e-18 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G060000.2 pacid=42773211 polypeptide=Potri.019G060000.2.p locus=Potri.019G060000 ID=Potri.019G060000.2.v4.1 annot-version=v4.1 ATGGTTTTCCCATGCGGGCACGTCACTTGCTGTAAATGTTTCTTTGCAATGACTGAGCGCAAAATGCATGATAACAGGTTCCAACGTAAATGGGTAATGT GCCCAACATGTCGGCAGCATACTGATTTTGGGAATATTGCTTATGCCGATGATAAACGGGACAAATCTTGTAGTTCTGCTATGCTGGATGCAATTCAAGG CTGTGAAAAAACTGAAGCGTCTTTGGCTGTTCAAGGTTCATATGGAACAAAGGTTGAAGCAATCACTAGAAGAATCTTGTGGATAAAGTCTTCAGATCCT AAAGCAAAGGTTCTCGTATTCTCAAGTTGGAATGATGTCCTTGATGTGTTAGAGCATGCTTTCAATGCTAATGAAGTCACCTATATCCGGATGAAAGGAG GAAGGAAATCACATGTTGCCATCAGTGAATTCAGAGCGCAGAATGGCAGTCCCAAAAGAACTGATAGACAACAACAAGAAACAAAATCTGTTCAAGTGTT GCTGCTCTTGATCCAGCATGGAGCCAATGGACTCAATCTTTTAGAAGCACAGCATGTTGTTCTTGTGGAGCCACTGCTCAATCCAGCAGCTGAGGCTCAA GCAGTCAGCCGGGTGCACCGAATTGGGCAGGAAAAGAGGACATTAGTCCATCGATTTATAGTTAAAGACACTGTGGAAGAGAGCATATATGAACTGAACA GATGTAGAAGCACCAGTTCATTCATAAGTGGGAACACGAAGAATCAGGATCAGACTTTGTTAACCCTTAAGGATGTTGAGTCCCTATTCGCAACAGTGCC GTCCACTGTACCAGAAAGTGATGGAAAGCCAACTGAAAACCTAAGACATCTGCCCCCGTCCGTGGCTGCTGCTCTAGCAGCTGAGAGGAGACTAAAGGAA AATACAGCAGGAATTTCCGTGTGA
AA sequence Show only first row Show all	>Potri.019G060000.2 pacid=42773211 polypeptide=Potri.019G060000.2.p locus=Potri.019G060000 ID=Potri.019G060000.2.v4.1 annot-version=v4.1 MVFPCGHVTCCKCFFAMTERKMHDNRFQRKWVMCPTCRQHTDFGNIAYADDKRDKSCSSAMLDAIQGCEKTEASLAVQGSYGTKVEAITRRILWIKSSDP KAKVLVFSSWNDVLDVLEHAFNANEVTYIRMKGGRKSHVAISEFRAQNGSPKRTDRQQQETKSVQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQ AVSRVHRIGQEKRTLVHRFIVKDTVEESIYELNRCRSTSSFISGNTKNQDQTLLTLKDVESLFATVPSTVPESDGKPTENLRHLPPSVAAALAAERRLKE NTAGISV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060000 [exp]	0	1
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Potri.014G077800 [exp]	4.35	0.8735
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.006G109200 [exp]	6.32	0.8890
AT1G23710			Protein of unknown function (D...		Potri.008G156901 [exp]	8.77	0.8851
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060300 [exp]	11.53	0.8906
AT1G09740			Adenine nucleotide alpha hydro...		Potri.005G157100 [exp]	12.00	0.8802
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	12.84	0.8918
AT5G40270			HD domain-containing metal-dep...		Potri.009G147800 [exp]	16.12	0.8936
					Potri.007G010000 [exp]	16.97	0.8915
AT5G12370		SEC10	exocyst complex component sec1...		Potri.002G164100 [exp]	18.33	0.8401
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Potri.001G356300 [exp]	23.40	0.7748

Compare expression of checked genes

Potri.019G060000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.