Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 736 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 679 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 509 / 2e-163 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 503 / 7e-161 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 479 / 5e-152 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 447 / 1e-139 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 449 / 2e-139 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G48940 446 / 3e-139 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G17750 441 / 8e-138 AtPEPR2 PEP1 receptor 2 (.1) AT1G73080 435 / 2e-135 ATPEPR1, PEPR1 PEP1 receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G060042 [exp] 1797 / 0 AT4G08850 733 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G059600 [exp] 1752 / 0 AT4G08850 734 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060400 [exp] 1679 / 0 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060084 [exp] 1437 / 0 AT4G08850 724 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G122500 [exp] 1381 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 1334 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 1334 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G060252 [exp] 1324 / 0 AT4G08850 692 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129300 [exp] 1281 / 0 AT4G08850 687 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008712 [exp] 761 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 753 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 735 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 717 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 662 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 656 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 651 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 634 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 632 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10011761 [exp] 484 / 1e-155 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G060168.1 pacid=42774651 polypeptide=Potri.019G060168.1.p locus=Potri.019G060168 ID=Potri.019G060168.1.v4.1 annot-version=v4.1 ATGACGACGTCCTTACTAAACAAACCATTCTTCTCCTTCTTTCTCCACATCCTGTTTTTGCTCCTTCACATATTCAACTCTTCTTCTTTCTTTGCTTTAG CTGAACACACTTCCTCCCCAACTTCACTATTTGGTAATAATAATACAGAAGCTGAGGCTCTTCTCCAATGGAAAGCCAGTCTTGACAACCAAAGCCAATC TCTCCTTTCTTCTTGGGTCGGCATCAGCCCTTGCATTAACTGGATTGGAATCACCTGTGACAATTCTGGAAGCGTCACCAATTTGACACTTGAAAGTTTT GGTTTGAGAGGTACGCTTTATGATTTCAACTTCTCATCCTTCCCCAATCTTTTTTGGCTTGACCTTCAAAAGAATTCTCTTTCTGGAACCATCCCACGTG AATTTGGAAAATTAAGAAATTTATCTTACCTTGATCTTTCTATTAACCACCTCTCTGGTCCCATCCCTTCTTCTATTGGAAACATGACCATGCTCACTGT TTTAGCACTATCTCATAATAATCTCACTGGTTCCATCCCTTCTTTTATTGGAAACTTCACAAGCCTATCCGGACTCTATCTTTGGAGTAACAAACTCTCT GGTTCCATTCCTCAAGAAATTGGGTTGCTAGAGTCTCTCAATATTCTTGACTTGGCAGATAATGTTTTAACTGGTAGAATCCCTTATTCCATTGGAAAAT TAAGAAATTTATTTTTCCTTGGTCTTTCTATGAACCAACTCTCTGGTCTCATCCCTTCTTCTATTAAAAACTTGACAAGTGTTTCTGAGTTCTATCTTGA AAAAAACAAACTCTCTAGTCCTATTCCTCAGGAAATTGGGTTGCTAGAGTCTCTCCATGTACTTGCCTTGGCAGGTAACAAATTTCACGGCCCATTGCCC TCAGAGATGAACAATCTCACCCATTTGCATGGTTTGGCTTTGGATGGCAACGAATTCACGGGTCATTTGCCAGTAGATTTATGCCATGGAGGAGTATTGA AAATCTTTACTGCTTCCTACAACTACTTCTCAGGCTCAATCCCGGAAAGCTTGAAAAACTGTACTGGTTTATACCGAGTAAGGCTTGATCGTAATCAGTT AACAGGAAATATTTCTGAGGTTTTTGGTATCTATCCACATCTGAATTATATTGATTTGAGTTACAATAATTTTTATGGCGAGCTTTCTTCAAAATGGGGA GATTGTCGTAACATGACAAGCCTTCAAATCTCAAAAAATAATGTTTCTGGTGAGATACCACCAGAGCTTGGGAAGGCTACTCAATTGCACTTGATAGATC TGTCATCAAATCAGTTAAAAGGAGGCATCCCAAAAGATTTAGGGGGTTTGAAGTTGTTGTTCAAGCTTATTCTTAACAACAACCATCTTTCAGGTGCCAT TCCCTTAGATATTAAGATGCTTTCCAATCTTCAAATCCTTAATTTAGCATCTAATAATCTGAGTGGATTGATTCCAAAACAACTTGGGGAATTCTTGAAT TTACTGTTGCTGAACCTCAGCGGTAATAAATTTAGAGAAAGCATTCCAGGTGAGATAGGCTTTCTACTTTCTCTTCAAGATCTTGATCTTAGCTGCAATT TCCTAACTCGAGATATACCGCGGGAACTTGGGCAACTGCAGAAGTTGGAAACTCTGAATGTCTCCCACAACATGCTTTCTGGACGGATTCCGAGCACTTT CAAAGACATGCTAAGCTTAACAACTGTGGATATCTCATCCAATAAGCTACAAGGCCCCATTCCCGATATCAAAGCCTTCCACAACGCTTCATTTGAGGCA TTAAGGGATAATATGGGTATATGTGGCAACGCCAGTGGTCTGAAGCCGTGCAATCTTCCAACAAGCAGCAAAACTGTTAAGAGAAAGAGCAACAAGCTTG TGGTTTTGATTGTACTCCCTCTTTTAGGAAGCTTGCTTTTAGTGTTTGTTGTGCTTGGAGCTTTATCCATTCTCTGCAAAAGAGCTAGGAAGAGAAACAC TGAGCCAGAAAATGAACAAGATCGAAACATATTCACGATATTGGGCCATGATGGGAAGAAGTTCTATGAGAATATCGTTGAAGCTACAGAGGAATTCAAC TCCAACTACTGCATTGGCGAAGGAGGATATGGAACTGTTTATAAAGCAGTGATGCCAACAGAACAAGTGGTCGCTGTGAAGAAACTTCACCGGTCACAAA CAGAAAAGTTGTCCGATTTTAAGGCTTTTGAAAAGGAAGTTTGCGTGTTGGCAAATATTCGACATCGAAATATTGTGAAAATGTATGGATTTTGCTCACA TGCAAAGCATTCTTTTTTGGTTTACGAGTTCATAGAAAGAGGAAGCTTGAGAAAGATTATAACCAGTGAGGAACAAGCAATTGAGTTCGATTGGACGAAA AGGCTAAACGTTGTGAAAGGGGTGGGTGGAGCTTTATCCTATCTACACCATTCTTGCTCTCCTCCGATCATTCATCGAGACATTACCAGCAATAATATCC TTGTGGACTTGGAATATGAAGCACACGTCTCCGACTTTGGCACCGCTAGACTGTTGATGCCTGACTCATCCAATTGGACCTCATTTGCAGGTACCTTTGG ATATACTGCTCCAGAGCTAGCTTACACAATGAAGGTGACTGAAAAATGCGATGTCTATAGCTTCGGAGTGGTAACAATGGAGGTGATGACAGGAAGGCAC CCCGGCGATCTCATTTCAGCACTCTTATCACCAGGATCTTCGTCATCATCATCGATGCCACCGATTGCTCAACATGCACTATTGAAGGATGTGTTAGACC AACGCATCTCGCTTCCTAAAAAAGGAGCAGCAGAGGGCGTTGTCCACATGATGAAAATTACACTTGCATGCTTGCATCCCAATCCCCAATCTCGGCCTAC AATGGAAAAAATTTCTTTCGAGCTTACAACTAAGTGGCCTCCACTGCCTCAGGCATTCGGCACAATAAGTTTGGGAGATCTCTTCTCATAG
AA sequence Show only first row Show all	>Potri.019G060168.1 pacid=42774651 polypeptide=Potri.019G060168.1.p locus=Potri.019G060168 ID=Potri.019G060168.1.v4.1 annot-version=v4.1 MTTSLLNKPFFSFFLHILFLLLHIFNSSSFFALAEHTSSPTSLFGNNNTEAEALLQWKASLDNQSQSLLSSWVGISPCINWIGITCDNSGSVTNLTLESF GLRGTLYDFNFSSFPNLFWLDLQKNSLSGTIPREFGKLRNLSYLDLSINHLSGPIPSSIGNMTMLTVLALSHNNLTGSIPSFIGNFTSLSGLYLWSNKLS GSIPQEIGLLESLNILDLADNVLTGRIPYSIGKLRNLFFLGLSMNQLSGLIPSSIKNLTSVSEFYLEKNKLSSPIPQEIGLLESLHVLALAGNKFHGPLP SEMNNLTHLHGLALDGNEFTGHLPVDLCHGGVLKIFTASYNYFSGSIPESLKNCTGLYRVRLDRNQLTGNISEVFGIYPHLNYIDLSYNNFYGELSSKWG DCRNMTSLQISKNNVSGEIPPELGKATQLHLIDLSSNQLKGGIPKDLGGLKLLFKLILNNNHLSGAIPLDIKMLSNLQILNLASNNLSGLIPKQLGEFLN LLLLNLSGNKFRESIPGEIGFLLSLQDLDLSCNFLTRDIPRELGQLQKLETLNVSHNMLSGRIPSTFKDMLSLTTVDISSNKLQGPIPDIKAFHNASFEA LRDNMGICGNASGLKPCNLPTSSKTVKRKSNKLVVLIVLPLLGSLLLVFVVLGALSILCKRARKRNTEPENEQDRNIFTILGHDGKKFYENIVEATEEFN SNYCIGEGGYGTVYKAVMPTEQVVAVKKLHRSQTEKLSDFKAFEKEVCVLANIRHRNIVKMYGFCSHAKHSFLVYEFIERGSLRKIITSEEQAIEFDWTK RLNVVKGVGGALSYLHHSCSPPIIHRDITSNNILVDLEYEAHVSDFGTARLLMPDSSNWTSFAGTFGYTAPELAYTMKVTEKCDVYSFGVVTMEVMTGRH PGDLISALLSPGSSSSSSMPPIAQHALLKDVLDQRISLPKKGAAEGVVHMMKITLACLHPNPQSRPTMEKISFELTTKWPPLPQAFGTISLGDLFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G060168 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G060084 [exp]	2.00	0.9480
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G060042 [exp]	5.65	0.9273
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G059600 [exp]	6.00	0.9306
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G060252 [exp]	6.70	0.9321
AT1G35710			Protein kinase family protein ...		Potri.019G120733 [exp]	11.83	0.9186
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050701 [exp]	19.07	0.9358
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G060650 [exp]	20.00	0.9326
AT5G38260			Protein kinase superfamily pro...		Potri.017G008600 [exp]	20.12	0.9335
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108766 [exp]	31.55	0.9332
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050501 [exp]	36.02	0.9308

Compare expression of checked genes

Potri.019G060168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.