Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40770 295 / 6e-92 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) AT5G43530 81 / 2e-17 Helicase protein with RING/U-box domain (.1) AT5G22750 75 / 2e-15 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT1G02670 74 / 5e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05120 73 / 9e-15 Helicase protein with RING/U-box domain (.1) AT1G11100 67 / 8e-13 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G61140 67 / 1e-12 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G50410 65 / 3e-12 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT5G05130 64 / 1e-11 DNA/RNA helicase protein (.1) AT5G63950 63 / 2e-11 CHR24 chromatin remodeling 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G060000 [exp] 409 / 5e-146 AT2G40770 414 / 4e-133 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060126 [exp] 409 / 5e-146 AT2G40770 414 / 4e-133 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060900 [exp] 412 / 5e-134 AT2G40770 1921 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060300 [exp] 375 / 8e-133 AT2G40770 360 / 6e-114 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.003G083400 [exp] 82 / 4e-18 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.004G189400 [exp] 78 / 1e-16 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.014G154600 [exp] 76 / 5e-16 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.011G046400 [exp] 70 / 9e-14 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.007G000700 [exp] 70 / 1e-13 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030512 [exp] 278 / 2e-90 AT2G40770 445 / 2e-139 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10012867 [exp] 282 / 2e-87 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10043365 [exp] 79 / 9e-17 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 78 / 2e-16 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10037696 [exp] 71 / 3e-14 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10041008 [exp] 71 / 5e-14 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10015690 [exp] 71 / 6e-14 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10030044 [exp] 70 / 1e-13 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10013452 [exp] 70 / 1e-13 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10039001 [exp] 68 / 3e-13 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G060210.1 pacid=42774535 polypeptide=Potri.019G060210.1.p locus=Potri.019G060210 ID=Potri.019G060210.1.v4.1 annot-version=v4.1 ATGACTGAGCGCAAAATGCATGATAACAGGTTCCAACGTAAATGGGTAATGTGCCCAACATGTCGGCAGCATACTGATTTTGGGAATATTGCTTATGCCG ATGATAAACGGGACAAATCTTGTAGTTCTGCTATGCTGGATGCAATTCAAGGCTGTGAAAAAACTGAAGCGTCTTTGTCTGTTCAAGGTTCATATGGAAC AAAGGTTGAAGCAGTCACTAGAAGAATCTTGTGGATGAAGTCTTCAGATCCTAGAGAAAAGGTTCTCGTATTCTCAAGTTGGAATGATGTCTTTGATGTG TTAGAGCATGCTCTCAATGCTAATGAAATCACCTATATCCGGATGAAAGGAGGAAGGAAATCACATGTTGCCATCAGTGAATTCAGAGCGCAGAATAGCA GTCCCAAAAGAACTGATAGACACCAACAAGAAACAAAATCTGTTCAAGTGTTGCTGCTCTTAATCCAGCATGGAGCCAATGGACTCAATCTGTTAGAAGC ACAGCATGTTGTTCTTGTGGAGCCACTGCTCAATCCAGCAGACGAGGCTCAAGCAGTCAGCCGGGTGCACCGATTTGGGCAGGAAAAGAGGACATTAGTC CATCGATTTATAGTATGCTCCTTTTCCTTTTCTTTTTTCCTTTTTTTTTTTTGTTAA
AA sequence Show only first row Show all	>Potri.019G060210.1 pacid=42774535 polypeptide=Potri.019G060210.1.p locus=Potri.019G060210 ID=Potri.019G060210.1.v4.1 annot-version=v4.1 MTERKMHDNRFQRKWVMCPTCRQHTDFGNIAYADDKRDKSCSSAMLDAIQGCEKTEASLSVQGSYGTKVEAVTRRILWMKSSDPREKVLVFSSWNDVFDV LEHALNANEITYIRMKGGRKSHVAISEFRAQNSSPKRTDRHQQETKSVQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPADEAQAVSRVHRFGQEKRTLV HRFIVCSFSFSFFLFFFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060210 [exp]	0	1
AT5G50780			Histidine kinase-, DNA gyrase ...		Potri.012G102800 [exp]	8.66	0.7697
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106632 [exp]	54.31	0.6998
AT2G43900			Endonuclease/exonuclease/phosp...		Potri.007G145100 [exp]	56.23	0.6325
AT3G20530			Protein kinase superfamily pro...		Potri.011G000600 [exp]	76.45	0.6194
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Potri.009G131700 [exp]	80.59	0.6751
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.001G120200 [exp]	81.54	0.6665
AT5G54980			Uncharacterised protein family...		Potri.008G052451 [exp]	159.68	0.6281
AT5G63460			SAP domain-containing protein ...		Potri.015G094600 [exp]	163.98	0.6194
AT2G32320			tRNAHis guanylyltransferase (....		Potri.002G233300 [exp]	175.51	0.6100
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.011G043100 [exp]	196.16	0.6200	Pt-ATMRP12.3

Compare expression of checked genes

Potri.019G060210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.