Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40770 1922 / 0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) AT5G22750 142 / 7e-34 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G43530 135 / 2e-31 Helicase protein with RING/U-box domain (.1) AT1G61140 124 / 3e-28 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G50410 120 / 5e-27 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT5G05130 115 / 1e-25 DNA/RNA helicase protein (.1) AT1G11100 110 / 6e-24 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT3G20010 109 / 9e-24 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G16600 100 / 5e-21 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G05120 99 / 1e-20 Helicase protein with RING/U-box domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G060000 [exp] 610 / 0 AT2G40770 414 / 4e-133 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060126 [exp] 610 / 0 AT2G40770 414 / 4e-133 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060300 [exp] 550 / 0 AT2G40770 360 / 6e-114 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.019G060210 [exp] 408 / 1e-131 AT2G40770 292 / 4e-91 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.004G189400 [exp] 176 / 4e-44 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 135 / 1e-31 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.004G037700 [exp] 127 / 3e-29 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.007G000700 [exp] 122 / 1e-27 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.011G046400 [exp] 122 / 1e-27 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012867 [exp] 2047 / 0 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10030512 [exp] 478 / 7e-151 AT2G40770 445 / 2e-139 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10043365 [exp] 174 / 2e-43 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 128 / 3e-29 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10039001 [exp] 117 / 5e-26 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10011211 [exp] 115 / 3e-25 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 112 / 1e-24 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 107 / 6e-23 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10030044 [exp] 93 / 1e-18 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10018465 [exp] 86 / 2e-16 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G060900.1 pacid=42774592 polypeptide=Potri.019G060900.1.p locus=Potri.019G060900 ID=Potri.019G060900.1.v4.1 annot-version=v4.1 ATGGGTAGAAGGAAGCAAGCCCGTCCTCACCGCTCGGGTGGGTTAATTATACAAAACAATGCAGCTGCTTCTGCTTCTGCTGAATTGAAGAATCAGAGGA AAGCATCATCCAGTGATGCTCAGCCAACAGAGTTAGTTGGTATTGATGAACAGCCTTATTTTGTCGAAGTTGAACGGAATAGTTGGGCTTCGAATCACCA CCGTGATGCTTCTGAACTTGTTTTACATGGTTTGAATTTAAGACAAGAGTATTCTAGTTTTCGAGTAACTGATGGTTTTTATCACGACTCTAAGTATTCT TTGAGGTTTCGTGTGTCCAATGTCAAGCAGTCTGTTCTTTCTCGCATTAAGTTAGGACATTGGCCTGTGTTTTCTTCTAGTGATATATCTTTGGAATTGA TTGAGAAATCCATGGTGGAGGAGGATAGGGAGGTGGAATCGGTGATTTTTTCAGGGAGTTTTGATGGACCTGATGAGGGTATTACTGGTCTTGTTCACTT GACAAATATGGAGTTTTTGACTTTGAGGCCAGTTCTGGGGGTTGATTTCTCAGAGAAGATGACGCCCCTGAGGATGAGGGTTGAAATACTTGAGAAAGCT TTTGATGCTTGTGAATCACTTCTTGAAAGTACCAGACAAATATGGAAGAAGAGCATGATGAATGTTATGGCTTGGTTACGTCCAGAAGTGATGACTTCAG AGGCTAGATATAGACATGCTAAGTCAACAGAAATGGAAGTCAACATGGCTGCAGAGATAGGAGATGATACTTCCAACTCTGGGAAACGTGCCCAGTTTGA TGTTGCTGGGTTATATGAAGCCATTAAGCCGTCAAAATCGGATCCTATGCTTGAAGATGACCTGCCTGACTTGCTCCCCACTTTGAGACCATATCAGCGT CGTGCTGCTCACTGGATGGTACAGCAAGAGAAAGGTGAAAGTTCGAGTGTAAAGGAAAGAAGCCAGTTCTTTTCTCCTTTATGTATGCCCGTGGATTTTC TCGACACATGTTCAAAAATGTTCTATAATCCTTTCAGTGGCAATGTTTCGTTCCATCCTGAGTTTTCTCCACCTTATGTCTCTGGTGGAATTCTTGCTGA TGAGATGGGTTTGGGGAAAACAGTTGAGTTGCTTGCTTGCATACTTGCTCATCGGAAGTCTACATCTGATGATGGTTCAGTTGTTGCTCCCACGTGGCAA AATACCGGGAATCAAAAGATTAATCTTAAAAGATTGAAAAGGGAGCGAGTTGAGTGTGTTTGCGGAGCTGTGAGTGATAGCTATAAATATAGAGGACTTT GGGTACAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAGAGGGAAAAAGAAGATGTCAGTGGATGATGAACAAAAGCA CAGAAACAAGACTACAATAAGCTATGTTGAGAGGGATGGGGAGCATGTTTGCCAGATGTGCTCTGAACTCATAGAAGTGGCTGACACTCCCATAGCTACT GGTGCCACTCTTATAGTCTGTCCAGCTCCTATATTGCCTCAATGGCATTCTGAAATCACACGGCATACACGTCCAGGTTCCTTAAAAACTTATGTGTATG AAGGCGTACGAGATACATCTCTTTCAAATACATTTGTAGTAGATATTGGTCAACTTGTCAACGCTGACATTGTATTGACAACATATGATGTGCTTAAAGA GGACCTCTTGCATGACTCTGATAGGCATGGAGGTGATAGGCACATCCTGAGATTCCAGAAGAGGTACCCTGTTACCCCAACTATTCTAACAAGAATATTT TGGTGGAGGGTTTGCTTGGATGAGGCTCAAATGGTGGAGAGTAATGCTGCAGCTGCCACTGAAATGGCTCTTCGATTGTCAACTAAACATCGTTGGTGTA TTACTGGGACTCCTATACAACGTAAACTTGATGACTTATATGGACTTCTAAGATTCTTGAAAGCAAGTCCCTTCAATGTTTCTAGGTGGTGGATTGATGT TATAAGGGATCCATATGAGAGGAGAGATGCAGATGCTATGGAATTTACACATAAATTCTTCAAACAAATCATGTGGCGCTCCTCTAAAATACATGTTGCT GATGAGTTACAACTACCACCGCAGGAAGAGTGTGTCTCTTGGCTCACCTTTTCAGCAATTGAAAAACACTTTTACCAGATGCAACATGAAACCTGTGTGA GTTATGCTCGAGAAGTTATTGGAAGTTTTAAAGATGATGTTGTCAAAAGAAAGGTCCCAGGTTGTGTATCAACTGATGCCTCAACAGATCCTTTGATAAC CCATGCAGAAGCGGCGAAGCTACTCAACTCGCTCTTGAAGCTTCGCCAAGCTTGCTGCCACCCGCAAGTAGGAAGTTCTGGGCTTCGCTCCCTGCAACAA TCCCCCATGACTATGGAGGAAATATTGATGGTTCTTGTAGGTAAGATGAAGATAGAGGGGGAGGAAGCTTTGAGGAAGTTAGTTGTTGCTTTAAATGCCC TTGCGGGGATAGCAATACTTGAGCAAAACTTTCCTCAAGCAGTATCATTGTACAAAGAAGCGCTGGCGCTATCTGAAGAACACCTTGAAGATTTCCGCCT AGATCCTTTATTGAATATTCACATCCATCACAACCTTGCTGATATACTTGCATTGGTTATGGACCACTCAACAGAAGTCCCATCTAATGGACAACAGTTG CATGGAAACTCTGAAAAGGCTTCCAAGATAAACAAATCTGAAACATGTGATCTAAATGATGCAAAGAAACAAAAAGCTAGTGGTGAAGATTCAGATTTCA CCATTGATGCTGGGAATTCACTGGACCTATCAGAAAATTGCTCAGTTGGTAATAAAAAAGGCAACAATAATCATGACATGTCATCCACATCCTTCAGTAC TCAATATTTGAGAACAGCGTGTGAGAACTTCAAACAGAAATACTTGTCTGTGTTTAGTTCAAAACTTTCTGCAGCTCAGCTTGACTTTAACAAATCATAC ACACAGGTTTGTAATGCATTTGGTGAGAGAAAAAATCTACATACAGTTTGGTGGTTGGATGCTCTCAATCATGCAGAACAGAACAAGGATTCCACAGGTG AGCTGATAAGAAAGATTGAAGAGGCTGTCTCAGGAACTCTAAACAATTCGAGATCATCAAGAATTGCATCACGTTTACGAAGCATTACTGGTCTGAAGTA CCACATCCACACACATTTAGATCAATTGGAAGCTTCTAGACAAACATTACTTGATCGAATTTTGGAAATTGATCAAACAATGGCGAACCCGAAGGAAGAG GATATTGAACGTGTGAGACATTGTCGAATATGCCAAGCTATTGACGATGGTCCCACATGTGTTCATTGTGAATTGGAGGAATCATTTCAGGAACATGAGG CAAGGTTATTTCGTCTTAACAAATTACATGGAGGCATTATTACATCTGCTGAAGAGGCAGTGAATCTGCAAAAAAGGAACTCAGAGAGAAATCGTTACTA CTGGAATTTAGACCGCCAAAAGAAAAATTTACTGCCATCTAGTGATTTTAATGAAGAATCGAAGAAAAGAAAGACTGGAGAAACAGTGATGGTTTCAAAA TCGCCATCTGAATTGGAGGTTATTCTTGGAGTTATAAAGAGCTATTGCAAGGCCCAGTTAGAAAATGAAGCTGTGTCTGCTGCCAGCCTGCAGATACACA TTCTGGAGGGAATGAGGAAGGAGTATGGACATGCAAGGTCCTTGGCAGTTGCTCAAGCTCAACTTCTTCGTGCTCATGATGAACTTAAGATGGCAACAGC ACGTTTGCACTTAAGAGAAAATGAGAATGATACGTCTATGGATGCTTTGGGTGAAGATGAATTAGAGTCTGCTAGCGTGCTACACTCTAATGAAAAGTTC ATGTCCTTGAACTTGCTGTCTCATACAAAGGGGAAACTTCGTTATCTGAAGGGTTTGGTACAGTCAAAACAGAAACCAACATCTGAAAGTTCAAATAATT CCTCATTAACTGAAGAAATGGCTGCCGTGCCAATGACAACAGAGAAGATAAGTGAATATTTGCCAAAAGATGATGAGGAAGCATGCCCTATCTGTCAAGA GAAGCTAAACAATCAAAAGATGGTTTTCCCATGCGGGCACGTCACTTGCTGTAAATGTTTCTTTGCAATGACTGAGCGAAAAATGCATGATAACAGGTTC CAACGTAAATGGGTAATGTGCCCAACATGTCGGCAGCATACTGATTTTGGGAATATTGCGTATGCCGATGATAGACGGGACAAATCTTGTAGTTCTGCTA TGCTGGATGCAATTCAAGGCTGTGAAAAAACTGAGGCGTCTTTGGCTGTTCAAGGTTCATATGGAACAAAGGTTGAAGCAGTCACTAGAAGAATCTTGTG GATAAAGTCTTCAGATCCTAAAGCAAAGGTTCTCGTATTCTCAAGTTGGAATGATGTCCTTGATGTGTTAGAGCATGCTCTCAATGCTAATGAAATCACC TATATCCGGATGAAAGGAGGAAGGAAATCACATGTTGCCATCAGTGAATTCAGAGCGCAGAATAGCAGTCCCAAAAGAACTCATAGACAACAACAAGAGA CAAAATCTATTCAAGTGTTGCTGCTCTTAATCCAGCATGGAGCCAATGGACTCAATCTCTTAGAAGCACAGCATGTTGTTCTTGTGGAGCCACTGCTCAA TCCAGCAGCTGAGGCTCAAGCAGTCAGCCGGGTGCACCGAATTGGGCAGGAACAGAGGACATTAGTCCATCGATTTATAGTTAAAGACACCGTGGAAGAG AGCATATATAAACTGAACAGAAGTAGAAGCACCAGTTCATTCATAAGTGGGAACACGAAGAATCAGGATCAGCCTTTGTTAACCCTTAAGGATGTTGAGT CCCTATTCGCAACAGTGCCATCCACTGTACCAGAAAGTGATGGAAAGCCAACTGAAAACCTAAGACATCTGCCCCCATCCGTGGCTGCTGCTCTAGCAGC TGAGAGGAGACTGAAGGAAAATACAGCAGGAATTTCCGTGTGA
AA sequence Show only first row Show all	>Potri.019G060900.1 pacid=42774592 polypeptide=Potri.019G060900.1.p locus=Potri.019G060900 ID=Potri.019G060900.1.v4.1 annot-version=v4.1 MGRRKQARPHRSGGLIIQNNAAASASAELKNQRKASSSDAQPTELVGIDEQPYFVEVERNSWASNHHRDASELVLHGLNLRQEYSSFRVTDGFYHDSKYS LRFRVSNVKQSVLSRIKLGHWPVFSSSDISLELIEKSMVEEDREVESVIFSGSFDGPDEGITGLVHLTNMEFLTLRPVLGVDFSEKMTPLRMRVEILEKA FDACESLLESTRQIWKKSMMNVMAWLRPEVMTSEARYRHAKSTEMEVNMAAEIGDDTSNSGKRAQFDVAGLYEAIKPSKSDPMLEDDLPDLLPTLRPYQR RAAHWMVQQEKGESSSVKERSQFFSPLCMPVDFLDTCSKMFYNPFSGNVSFHPEFSPPYVSGGILADEMGLGKTVELLACILAHRKSTSDDGSVVAPTWQ NTGNQKINLKRLKRERVECVCGAVSDSYKYRGLWVQCDICDAWQHADCVGYSPRGKKKMSVDDEQKHRNKTTISYVERDGEHVCQMCSELIEVADTPIAT GATLIVCPAPILPQWHSEITRHTRPGSLKTYVYEGVRDTSLSNTFVVDIGQLVNADIVLTTYDVLKEDLLHDSDRHGGDRHILRFQKRYPVTPTILTRIF WWRVCLDEAQMVESNAAAATEMALRLSTKHRWCITGTPIQRKLDDLYGLLRFLKASPFNVSRWWIDVIRDPYERRDADAMEFTHKFFKQIMWRSSKIHVA DELQLPPQEECVSWLTFSAIEKHFYQMQHETCVSYAREVIGSFKDDVVKRKVPGCVSTDASTDPLITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ SPMTMEEILMVLVGKMKIEGEEALRKLVVALNALAGIAILEQNFPQAVSLYKEALALSEEHLEDFRLDPLLNIHIHHNLADILALVMDHSTEVPSNGQQL HGNSEKASKINKSETCDLNDAKKQKASGEDSDFTIDAGNSLDLSENCSVGNKKGNNNHDMSSTSFSTQYLRTACENFKQKYLSVFSSKLSAAQLDFNKSY TQVCNAFGERKNLHTVWWLDALNHAEQNKDSTGELIRKIEEAVSGTLNNSRSSRIASRLRSITGLKYHIHTHLDQLEASRQTLLDRILEIDQTMANPKEE DIERVRHCRICQAIDDGPTCVHCELEESFQEHEARLFRLNKLHGGIITSAEEAVNLQKRNSERNRYYWNLDRQKKNLLPSSDFNEESKKRKTGETVMVSK SPSELEVILGVIKSYCKAQLENEAVSAASLQIHILEGMRKEYGHARSLAVAQAQLLRAHDELKMATARLHLRENENDTSMDALGEDELESASVLHSNEKF MSLNLLSHTKGKLRYLKGLVQSKQKPTSESSNNSSLTEEMAAVPMTTEKISEYLPKDDEEACPICQEKLNNQKMVFPCGHVTCCKCFFAMTERKMHDNRF QRKWVMCPTCRQHTDFGNIAYADDRRDKSCSSAMLDAIQGCEKTEASLAVQGSYGTKVEAVTRRILWIKSSDPKAKVLVFSSWNDVLDVLEHALNANEIT YIRMKGGRKSHVAISEFRAQNSSPKRTHRQQQETKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAVSRVHRIGQEQRTLVHRFIVKDTVEE SIYKLNRSRSTSSFISGNTKNQDQPLLTLKDVESLFATVPSTVPESDGKPTENLRHLPPSVAAALAAERRLKENTAGISV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	0	1
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	1.00	0.9458
AT3G17740			unknown protein		Potri.015G033300 [exp]	2.44	0.9214
AT5G08550		ILP1	increased level of polyploidy1...		Potri.008G002600 [exp]	2.82	0.9136
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Potri.004G179000 [exp]	3.31	0.9014
AT1G27750			nucleic acid binding (.1)		Potri.014G017000 [exp]	3.46	0.9189
AT5G20610			unknown protein		Potri.006G145500 [exp]	3.46	0.8986
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	3.74	0.9087
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261600 [exp]	3.87	0.8940	RGA.64
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Potri.001G317200 [exp]	4.24	0.9109
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Potri.015G008700 [exp]	5.19	0.9050

Compare expression of checked genes

Potri.019G060900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.