Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05200 831 / 0 Protein kinase superfamily protein (.1) AT5G64940 156 / 2e-40 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT4G31390 151 / 6e-39 Protein kinase superfamily protein (.1.2) AT5G50330 144 / 3e-37 Protein kinase superfamily protein (.1.2) AT4G24810 140 / 2e-36 Protein kinase superfamily protein (.1.2.3) AT3G07700 142 / 7e-36 Protein kinase superfamily protein (.1.2.3) AT1G79600 142 / 9e-36 Protein kinase superfamily protein (.1) AT3G24190 140 / 5e-35 Protein kinase superfamily protein (.1) AT2G39190 136 / 8e-34 ATATH8 Protein kinase superfamily protein (.1.2) AT1G71810 135 / 2e-33 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090000 [exp] 168 / 5e-46 AT3G26580 323 / 2e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G083200 [exp] 161 / 3e-42 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.006G275600 [exp] 158 / 2e-41 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G082500 [exp] 157 / 6e-41 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.015G091000 [exp] 146 / 4e-38 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G093600 [exp] 142 / 7e-37 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G000100 [exp] 137 / 6e-34 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.014G168600 [exp] 136 / 9e-34 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G221000 [exp] 135 / 2e-33 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030509 [exp] 790 / 0 AT5G05200 796 / 0.0 Protein kinase superfamily protein (.1) Lus10012865 [exp] 693 / 0 AT5G05200 680 / 0.0 Protein kinase superfamily protein (.1) Lus10036636 [exp] 160 / 8e-42 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035701 [exp] 154 / 9e-40 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10012864 [exp] 138 / 5e-39 AT5G05200 159 / 1e-47 Protein kinase superfamily protein (.1) Lus10006363 [exp] 148 / 1e-37 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035853 [exp] 147 / 2e-37 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10012317 [exp] 147 / 4e-37 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10020152 [exp] 145 / 9e-37 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032628 [exp] 136 / 3e-34 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF03109 [poplar] [flax] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Potri.019G061300.1 pacid=42773101 polypeptide=Potri.019G061300.1.p locus=Potri.019G061300 ID=Potri.019G061300.1.v4.1 annot-version=v4.1 ATGGCGATAATTTCTGTGTCAGCACTAAGAGGGGCTCGGTTCCCTCTCTTTACCAATAATCCACAACCATTTCCTCAGTTTCCAATTCCAAGCAGGAGAT CAAGTAAGCTCAATTTTCGCTCAAAGGGTTTTACCCCTTTTGCCCGGTATGCTCAATCACAGCAGGATCTTTTCTCTTCTCGCCTCCAAGACGGTATTGA AAACTTGCCCAAACTTGTGGAGGATATTGTTCAGACATCTATCAATACCGGTCCACGTGGAGCCCTAAGGCTGGCTCAAGGTATTCAAGCATTTCTTGGA GTTGGTGGCGAGTGGCTGGCAGATGCATCAAAGTCTACAAATTCTTCTGCTGGATTACCAACCCAAATGCAGCTTGGATTACTTTCTCCACAATATTTGA GGAGATTGTTTGAACGCATGGGAGCAACCTATATTAAATTAGGTCAGTTCATAGCATCTGCACCTACATTGTTCCCAGCAGAATATGTACAAGAATTTCA GAACTGTTTCGACAGAGCTCCATCAGTTCCTTTTCAAGAAATTCAAGCAATCTTGCGTGAGGAATTAGGAAGACCAATAGACAGTGTGTACGAATATGTT GACCCAACACCAGTTGCCTCGGCCTCAATTGCACAGGTTCATGCTGCAAGGCTCAAGGGCTCTCAAGACAATGTAGTTATAAAGGTCTTGAAACCTGGAA TAAAAGATATCCTAGTGGCAGATTTGAACTTTGTTTACATTGTTGCTCGCATATTGGAGTTTTTAAACCCTGAACTCAGCCGTGCATCACTGGTTGGTAT TGTCAAAGACATAAGAGAGTCCATGCTTGAAGAAGTCGACTTTTATAAGGAAGCTGCAAACATCGAGGCCTTTAGGAGTTATTTGGAAGCTATGGGACTT ACAAGGCAAGCTACAGCTCCAAAAGTATACCAGCACTGCAGTACCCAGCGAATTCTTACAATGGAGAGGCTATATGGAGTGCCTCTCACTGACCTGGACT CTATAAGCTCACTTGTTTCTAGTCCAGAGACCAGTCTTATAACTGCCCTCAATGTGTGGTTTGGTAGTTTACTTGCATGTGAAACTTTCCATGCAGATGT TCATGCCGGCAATTTGTGGTTGTTACGTGATGGCCGCATTGGGTTTCTTGATTTCGGAATTGTTGGTCGCATATCCCCAAAAACATGGACTGCTATGGAA GTGTTTCTTGCATCAATTGCAACTGAAGAATATGAGTCAATGGCATCTGCCTTGATTGAAATGGGTGCCACAAACAAGGATGTGGATGTTATGGCCTTTG CCAAAGACCTGGAAAAGATATTCTCATCAATACAGGATTTGGATACTGACTTAATCGTTGCAACCGCCAGGGATACAACTACAAATGCAACTGCTGTCTC TGCCAATGTTGTTGTTGATGAGAGGCAGATGAATGCACTCTTTCTTGATGTGATTCGGGTTAGTGAATCATATGGACTCAAATTTCCCAGGGAGTTTGCT CTTCTCATGAAACAGCTTCTGTATTTTGATCGGTACACCCGATTGCTGGCCCCCAACTTAAACATGCTTCAGGACCAGAGGATTTCCATTGTTTCAAATC GAGGAAGCAGATATAAGAACAGCTTCAGATGA
AA sequence Show only first row Show all	>Potri.019G061300.1 pacid=42773101 polypeptide=Potri.019G061300.1.p locus=Potri.019G061300 ID=Potri.019G061300.1.v4.1 annot-version=v4.1 MAIISVSALRGARFPLFTNNPQPFPQFPIPSRRSSKLNFRSKGFTPFARYAQSQQDLFSSRLQDGIENLPKLVEDIVQTSINTGPRGALRLAQGIQAFLG VGGEWLADASKSTNSSAGLPTQMQLGLLSPQYLRRLFERMGATYIKLGQFIASAPTLFPAEYVQEFQNCFDRAPSVPFQEIQAILREELGRPIDSVYEYV DPTPVASASIAQVHAARLKGSQDNVVIKVLKPGIKDILVADLNFVYIVARILEFLNPELSRASLVGIVKDIRESMLEEVDFYKEAANIEAFRSYLEAMGL TRQATAPKVYQHCSTQRILTMERLYGVPLTDLDSISSLVSSPETSLITALNVWFGSLLACETFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWTAME VFLASIATEEYESMASALIEMGATNKDVDVMAFAKDLEKIFSSIQDLDTDLIVATARDTTTNATAVSANVVVDERQMNALFLDVIRVSESYGLKFPREFA LLMKQLLYFDRYTRLLAPNLNMLQDQRISIVSNRGSRYKNSFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05200			Protein kinase superfamily pro...		Potri.019G061300 [exp]	0	1
AT2G42750			DNAJ heat shock N-terminal dom...		Potri.014G143400 [exp]	1.00	0.9859
AT4G13670		PTAC5	plastid transcriptionally acti...		Potri.001G049900 [exp]	2.44	0.9824
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G098800 [exp]	3.46	0.9651
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Potri.004G126700 [exp]	5.09	0.9570
AT3G62410		CP12-2	CP12 DOMAIN-CONTAINING PROTEIN...		Potri.014G120700 [exp]	5.19	0.9706
AT2G20920			Protein of unknown function (D...		Potri.009G137600 [exp]	7.48	0.9656
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014301 [exp]	9.16	0.9569
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.005G085400 [exp]	10.72	0.9655
AT5G23240			DNAJ heat shock N-terminal dom...		Potri.007G072600 [exp]	10.95	0.9531
AT1G51100			unknown protein		Potri.011G132900 [exp]	14.28	0.9537

Compare expression of checked genes

Potri.019G061300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.