Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05190 112 / 5e-25 Protein of unknown function (DUF3133) (.1) AT3G56410 78 / 3e-14 Protein of unknown function (DUF3133) (.1), Protein of unknown function (DUF3133) (.2) AT2G46380 61 / 4e-09 Protein of unknown function (DUF3133) (.1) AT1G01440 60 / 9e-09 Protein of unknown function (DUF3133) (.1) AT3G61670 60 / 1e-08 Protein of unknown function (DUF3133) (.1) AT4G01090 59 / 3e-08 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G095700 [exp] 66 / 1e-10 AT3G61670 559 / 0.0 Protein of unknown function (DUF3133) (.1) Potri.003G137700 [exp] 52 / 2e-06 AT3G61670 335 / 1e-101 Protein of unknown function (DUF3133) (.1) Potri.001G093900 [exp] 50 / 2e-05 AT3G61670 370 / 2e-114 Protein of unknown function (DUF3133) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030508 [exp] 259 / 4e-72 AT5G05190 114 / 4e-26 Protein of unknown function (DUF3133) (.1) Lus10012863 [exp] 250 / 2e-69 AT5G05190 110 / 9e-25 Protein of unknown function (DUF3133) (.1) Lus10034250 [exp] 97 / 7e-21 AT5G05190 68 / 4e-12 Protein of unknown function (DUF3133) (.1) Lus10029013 [exp] 85 / 4e-17 AT5G05190 64 / 6e-11 Protein of unknown function (DUF3133) (.1) Lus10005153 [exp] 52 / 4e-06 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1) Lus10001910 [exp] 51 / 5e-06 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1) Lus10003905 [exp] 50 / 1e-05 AT2G46380 271 / 8e-80 Protein of unknown function (DUF3133) (.1) Lus10003040 [exp] 50 / 1e-05 AT3G61670 484 / 1e-158 Protein of unknown function (DUF3133) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF11331 [poplar] [flax] zinc_ribbon_12 Probable zinc-ribbon domain
Representative CDS sequence Show only first row Show all	>Potri.019G061400.2 pacid=42773269 polypeptide=Potri.019G061400.2.p locus=Potri.019G061400 ID=Potri.019G061400.2.v4.1 annot-version=v4.1 ATGAACAGTGGATCAGCTGCTAAAATTCGGTTTGTCAGATGTCCTAAATGTCGGCAGGTTCTTGTGGAGCCACAAGATATTCCAGTCTACAAATGTGGTG GCTGTGGCACACATCTTCAAGTGAAAATTCGAAAAAGTAACCCTGAAGTCGCAACTTCTGGCCTGCATGAAACAGATGCTGCTCAGAAAAATAGATCAGA TCATATTTCTGAAGCTAAGGAATCCAGCAGCTCAAATCATGAAGAAAATTTTCTTTCCCCTGGGGAATGTTCTCCAGACCAACTCAATGGGGGGGATTGT GCTGCATCTGGCGATTTTGATCTTGATCATCTCAGTGGTGCAAACTTACCAGAAGAACTGCAAAGGAGTGGAAGTGATCGAAATGGTTCTGGAGATTTTG ATAGTAAGCAACCTGGAGGTGTGAACTCATCACACAACCAAAAGAATGAGATTGATAAAAATGATCCAGGGGACTCTGATAATGAGCATGTTGTAGGTGT AGGCTCATCCAATGAACACCAACAGAATGGGAGTGGTCAAAATGAGACTGAGGATTGTGTTGATTTGAAGGTAATAGGCACAAGCTTGTCAAGTGATGAT CAGGAAACAGGAAATGATTCAAATGAATCTCCAGAGTGTGATCATGAACAGCCTGAAATTTTCAATGAAGTTCAAATCCAACAAATTGAATCTGGGGATT GCAATGATGAGCAACTTAGAGGTATGGGGGTCATATCAACTGAAGCACAAAATGACTGGAGTGATCGAAATGATTCTTCTGATTGCAATGTTGAACAGGC TGGGTTTTCCTATAAAGTTTGTTCGCCTACCAAACTTGATGAAGAGCAGTCCCAACTGGCGGCAGCAAAACCAAAAGCTGAAGTCAATGAAGGTGGGATT CAACAAAATGAGTCTGGAGCTTTCAGTGATGAGCAACTTGGAAGTGTGAACTTATCAACAGAAGCAGAAGATGACAGGAGTGATCAAAATGATTCCTTGG ATTTCAGCATTGAACAGGCTGGAAGTGATGAAAGCTCACCATTAACAGTCACAAAAGCAGAATTAGATGCTCACAGTGATAGTGATGGAACTTCCAACGA TGTTTGTTCTCCCACCAGACGTGCTCATCTCAAGAACAAAGAGCCACCCCCACTAGCAGGAGCAAAAAAAGAAGTTGAAGTGAGTGATGAAAGCTCACCA TTAACAGTCACAAAAGCAGAATTAGATGCTCACAGTGATAGTGATGGAACTTCCAACGATGTTTGTTCTCCCACCAGACGTGCTCATCTCAAGAACAAAG AGCCACCCCCACTAGCAGGAGCAAAAAAAGAAGTTGAAGTGAGTGATGAAAGCTCACCATTAACAGTCACAAAAGCAGAATTAGATGCTCACAGTGATAG TGATGGAACTTCCAACGATGTTTGTTCTCCCACCAGACGTGCTCATCTCAAGAACAAAGAGCCACCCCCACTAGCAGGAGCAAAAAAAGAAGTTGAAGTG AGTGATGGAAGCTCACCATTAACAGTCACAAAAGCAGAATTAGATGCTCACAGTGATAGTGATGGAACTTCCAACGATGTTTGTTCTCCCACCAGACGTG CTCATCTCAAGAACGAAGAGCCATCCCCACTAGCAGCATCAGAAGTTGAAGTGAGTGATGGAAGCTCACAATTAGCAGCCACAAAAGCAGAATTAGATGC TCACAGTGATAGTGATGGAACTTCCAACGATGATTGTTCACTCACCAAACTTGCTCTTCTTGAGAACAAAGAGTTGTCTTCAGTGGAAGGGGAAAAATCA GAAGCTGGAGCCAGTAATGAAAGCTCACAATTAGCAGGAGCAAAAGCATTACTAGATGCTTCCAAAGAGAGTGGTTCTGATTTCATAAAATCAAGTATTG AGAAGTCAGTTGACAAGGAGGGTGCTTCAGTTGTCGCTGCTCAAAGGCCTGCAGGAGAAAGCATTTCATCAGACATTTTTGTAACTTCGCCAAATGAACA GCTAGAGAAGCTTCATGAAACAGGTCGCCATGATTTTGACCGTGTACAGTGTACAGATACATTCAAAACTATGGATTTGATTGACCCCAGCTCTGAGTTA AGTGACAGTCTTATAGACTTGTCTAAATCCCCAGCCACCAGAAGCTCTCGGGCTTACTATGATGACACTGTCTCTTCATATGAAGGAACAGATGATCAAT TACCTGATCGACCCAAGCATCCATTTAGAAATACTCATAAGCAAGCAAATCATGCAGCTTCCAATGAGAGACCCAGAAGCGAAAAGTTCGTGGCGAATAG CAGTTTGGAAATGCAGCATCACTTGAAGAATCATACATCAATTATTTCTGATAATAATCACCGTGCCTTGAAATCCAGCAAACTAAATCATGATGAATTG GTAGAGCACACAAGGGTTGCCCATCCAGCTAGAAACTGGAGAAGACTGGAGAAGGATGAATATCCATCTCAGGCTCCTTTCTATCAAAGAGACTTCTTGG CTGGCTATGATAATGGGAGCCCTTCCAATCAAAACAACAATGAATCCCGTTCCAATCCGTACTTTCATTCACGTGAAAAGGCTGCATACACTGAACAGGA GAAGATGAAACTGTTGGAAATGATTTATGAATTGCAGGATCAAGTTAACGTTCTGAATGGAAAGGAAAAAGGGAGGGTTGCTCCAGGGGTCACTTGGAAG GACCATAATCCCAGTTACAATGATCATCTGGAGCAGGTAATTTTCGATGACTTAGACTATCTGAGTTATCCTGGAAGATTCAGAGGGGGGCGCAACTGGC ATCAACAGAGTAAATACTCCCAAATACCTTTCTCAGCAGAGGTAGCAAGCAATCGAAACCAAGTTGATCACTTGTGTTGCTGTCCCCAAGACTGTCGCTT GGCACAACTACCTCCACCTAACCTTCATCATAATAGAGTGTTTTGCAAGGCCCAAGATCATGTCGAATTTTACCATTCCTATGGTTCTTGTCCCTCAACT CCACAACGGCATGCTGACTCTGAGTTTTCCATATATAGGCGTGAAACACTTTCTGATGACCACAGGCGTAGGGATCAGGAGGTAAAGAAGTATGTAACGA AGAAACATCACTTGGCTAAGCGGCACCTCCTGCCCCTGGCAGGTGGAGCCCCTTTCATAACATGTTTTTTTTGCTTCAAACAGCTTCAGCTACCTGCAGA TTTTCTTCTTTCTAAAAGGAAGTACCACCAGCTAAGATGTGGTGTCTGTTTGGAAGTACTTAGATTTTCACTTATAAGCAGGACTCATCTAGTTCCATAT ACACCGACTGCTGATGCACCTCCACCAAGTGAGGTTGATGAGCATAGTGGCGGTCTTCATAGGAGAATTTCAGCTTCATCTTCTCATGCCAGCAATTGTC CCAACATGGATCCTGTGTCATGTTCTGAAGATTATGGACTTCCATTCTGTAAAAGCGGTTCCACTGATGGGGATCCTGTCCAGACATCATTACGTTCAGC TGAAAGCAGCCTGAATGAGCGTCGGAAGAATCTCAAGGAAAAGCATGAATTATCTGGACCTTCTTCTAGCATGTCCAAAACAAAGAAAGTATCTTCAGAA ATTGAGGAGCTGCCAAGGAAAGGAGGAGGAGGTTCCCCACTTCACCGACTCATGGGTTATTCCTCACCAAGTCGACTGATATATGGTTATGAACCATCTT GTTCAAGTTGGTACTATCCAACAGAAGACTAA
AA sequence Show only first row Show all	>Potri.019G061400.2 pacid=42773269 polypeptide=Potri.019G061400.2.p locus=Potri.019G061400 ID=Potri.019G061400.2.v4.1 annot-version=v4.1 MNSGSAAKIRFVRCPKCRQVLVEPQDIPVYKCGGCGTHLQVKIRKSNPEVATSGLHETDAAQKNRSDHISEAKESSSSNHEENFLSPGECSPDQLNGGDC AASGDFDLDHLSGANLPEELQRSGSDRNGSGDFDSKQPGGVNSSHNQKNEIDKNDPGDSDNEHVVGVGSSNEHQQNGSGQNETEDCVDLKVIGTSLSSDD QETGNDSNESPECDHEQPEIFNEVQIQQIESGDCNDEQLRGMGVISTEAQNDWSDRNDSSDCNVEQAGFSYKVCSPTKLDEEQSQLAAAKPKAEVNEGGI QQNESGAFSDEQLGSVNLSTEAEDDRSDQNDSLDFSIEQAGSDESSPLTVTKAELDAHSDSDGTSNDVCSPTRRAHLKNKEPPPLAGAKKEVEVSDESSP LTVTKAELDAHSDSDGTSNDVCSPTRRAHLKNKEPPPLAGAKKEVEVSDESSPLTVTKAELDAHSDSDGTSNDVCSPTRRAHLKNKEPPPLAGAKKEVEV SDGSSPLTVTKAELDAHSDSDGTSNDVCSPTRRAHLKNEEPSPLAASEVEVSDGSSQLAATKAELDAHSDSDGTSNDDCSLTKLALLENKELSSVEGEKS EAGASNESSQLAGAKALLDASKESGSDFIKSSIEKSVDKEGASVVAAQRPAGESISSDIFVTSPNEQLEKLHETGRHDFDRVQCTDTFKTMDLIDPSSEL SDSLIDLSKSPATRSSRAYYDDTVSSYEGTDDQLPDRPKHPFRNTHKQANHAASNERPRSEKFVANSSLEMQHHLKNHTSIISDNNHRALKSSKLNHDEL VEHTRVAHPARNWRRLEKDEYPSQAPFYQRDFLAGYDNGSPSNQNNNESRSNPYFHSREKAAYTEQEKMKLLEMIYELQDQVNVLNGKEKGRVAPGVTWK DHNPSYNDHLEQVIFDDLDYLSYPGRFRGGRNWHQQSKYSQIPFSAEVASNRNQVDHLCCCPQDCRLAQLPPPNLHHNRVFCKAQDHVEFYHSYGSCPST PQRHADSEFSIYRRETLSDDHRRRDQEVKKYVTKKHHLAKRHLLPLAGGAPFITCFFCFKQLQLPADFLLSKRKYHQLRCGVCLEVLRFSLISRTHLVPY TPTADAPPPSEVDEHSGGLHRRISASSSHASNCPNMDPVSCSEDYGLPFCKSGSTDGDPVQTSLRSAESSLNERRKNLKEKHELSGPSSSMSKTKKVSSE IEELPRKGGGGSPLHRLMGYSSPSRLIYGYEPSCSSWYYPTED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05190			Protein of unknown function (D...		Potri.019G061400 [exp]	0	1
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	1.73	0.9326
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.002G231700 [exp]	3.87	0.8912
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	4.00	0.9082	Pt-RGA.54
					Potri.002G139000 [exp]	8.77	0.8802
AT2G45910			U-box domain-containing protei...		Potri.014G084900 [exp]	10.58	0.8839
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	12.96	0.8855	Pt-ATCNGC19.3
AT1G68940			Armadillo/beta-catenin-like re...		Potri.003G201000 [exp]	13.56	0.8834
AT5G38260			Protein kinase superfamily pro...		Potri.015G045000 [exp]	15.55	0.8699
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	15.58	0.8810
AT2G19130			S-locus lectin protein kinase ...		Potri.019G119200 [exp]	16.30	0.8726

Compare expression of checked genes

Potri.019G061400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.