Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) AT5G61000 58 / 9e-09 ATRPA70D Replication factor-A protein 1-related (.1) AT5G08020 57 / 2e-08 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165480 [exp] 503 / 2e-177 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.003G004401 [exp] 437 / 2e-152 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.006G172600 [exp] 390 / 9e-134 ND / Potri.014G182232 [exp] 384 / 1e-131 ND / Potri.001G062301 [exp] 278 / 1e-91 ND / Potri.003G004301 [exp] 267 / 3e-87 ND / Potri.001G320601 [exp] 239 / 3e-76 ND / Potri.001G165360 [exp] 129 / 3e-36 ND / Potri.018G065300 [exp] 56 / 5e-08 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036312 [exp] 107 / 4e-24 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10026445 [exp] 87 / 7e-18 AT4G19130 41 / 0.002 Replication factor-A protein 1-related (.1) Lus10003025 [exp] 74 / 7e-14 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10034056 [exp] 70 / 2e-12 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10042979 [exp] 62 / 1e-09 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10040517 [exp] 60 / 4e-09 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10030315 [exp] 59 / 6e-09 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2) Lus10021153 [exp] 59 / 1e-08 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006887 [exp] 58 / 1e-08 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10006548 [exp] 56 / 5e-08 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF16900 [poplar] [flax] REPA_OB_2 Replication protein A OB domain
Representative CDS sequence Show only first row Show all	>Potri.019G061550.1 pacid=42774013 polypeptide=Potri.019G061550.1.p locus=Potri.019G061550 ID=Potri.019G061550.1.v4.1 annot-version=v4.1 ATGGCTCTACCTATAAAAGAGATTAAAACATACCACTTCTACCCTTCATTACGAGCGAGGGCATGTCGTGTTTGGATTTCTAAATTTAATGGCCAGCCAA GAAGTTTTAATTGTGTTTTTGTTGATAATCAGGGTGGAGCTATTCAAGGTTTAGCTAAAGCAAGGGATCTCCCAACATTTGCAGCAACAATTATTGAAGG AAATCACTATGAAATCAAAGGATTTTATACTTATGAAAACAGAGCAGTAAACATAGTAGTTGCTGCCAATAATGCTATAATTGATCTCAAATCTAACACA AAAATTGCAGCCATTGAACCTATTCAACCTTACGTTCCTAGATACTACTTCAAATTTATTGACTATGCAAATATTATCACCAATTCAAAAGGATCCAGAA TTCTTACAGATGTCATTGGAAGACTTAAAGCATTGCAACCACTCGAACAAGTTATGGTTCGTGGAAAGATGCTCGAAAATAAGAGAGAATTCATGCTTGA GAACATATGTGGAGAGGAGCTTCACATAACTCTTTGGGGCGATAGTGCCCAAGACTTTGATGAACTCGCTCTTCGCAACCTACCATCTCCAGTCATCATT GCGTTTGCTGGATTTCGTGTCACAGAATTTAAGGGAAAACCAAATCTTAACAGTACAGATGCCTCTCTTTGGTACTTCAATCCAGACATACCAGAATGTT CAACATATAAACATTTCTTTGCACAACTATCTGTTGAAATCCAACAACTCCCCTCATCCTCGAATGCTGTTTTATCGATAGAGGAACAAATCAAAGAAAA TAGGAGAACAATACATGAGATTCTTTGCATGAACCCTTATGAGCACAAGCATTTGAGATTCACTTGTCAAGCTTTGATTGTTGACTTTGATTTTTCCAAT GGCTGGTGGTATCCAAGCTGTCCAAAATGCAACAAAAAACTTAGTTGGGGCGAAAACATTTACACATGCGTGGATCATGATGCTATCACCTCTCTTCCAG TTCCATGGTTTCGCTTAGAATGCATTGTTACTGATGGAGAAGATGTCACTAATTTCCTTCTATTTGGGAAAACTGCTGAGAACTTTTTTGGATCATCAGC CTACCATTATGTCTATGATAAAAAATTTATTGATCCTTCAGTTATTCCTCCTGCCATGGCAGCAAAGTTAAACAAAAGCATGATTTTTCAGCTTCGTTTT GGTGCTTTCGGATTCACCACCAACAACAGATGTGAAATTATCATTACTAATATCTTTGATGACACCACAAATAAGAACATCCATCCTCTAGAGACACCAC TTATAGAAGCTAAATCATCTACTACATCCAAGACATCTACTCCATTAAGCTCTACAAAACAGGTTCTTATAGGTCCATGTACTCCACAAAATACAATCAC ACAACTCAAGATTGCTTCTAGTTCCTTGAAGACACCATCCCGGAACATATCGCTAAACAAGGAAACAAGCTTGAATTATGAAGCACGACGTGCACTTGAT TTTGAAGCTACAACACAGCAACTTAGTATTGACGATCAGTGTGGCAACGTAATTGAAGCTGAAGGAAGCCTGGGAAACATAGCTACATCTGATACATTTG ATCACTTACTTCCACATCTGAAAAAACAACGAACAAAATCCTCATCATCCTCAAAGGAGAACTAG
AA sequence Show only first row Show all	>Potri.019G061550.1 pacid=42774013 polypeptide=Potri.019G061550.1.p locus=Potri.019G061550 ID=Potri.019G061550.1.v4.1 annot-version=v4.1 MALPIKEIKTYHFYPSLRARACRVWISKFNGQPRSFNCVFVDNQGGAIQGLAKARDLPTFAATIIEGNHYEIKGFYTYENRAVNIVVAANNAIIDLKSNT KIAAIEPIQPYVPRYYFKFIDYANIITNSKGSRILTDVIGRLKALQPLEQVMVRGKMLENKREFMLENICGEELHITLWGDSAQDFDELALRNLPSPVII AFAGFRVTEFKGKPNLNSTDASLWYFNPDIPECSTYKHFFAQLSVEIQQLPSSSNAVLSIEEQIKENRRTIHEILCMNPYEHKHLRFTCQALIVDFDFSN GWWYPSCPKCNKKLSWGENIYTCVDHDAITSLPVPWFRLECIVTDGEDVTNFLLFGKTAENFFGSSAYHYVYDKKFIDPSVIPPAMAAKLNKSMIFQLRF GAFGFTTNNRCEIIITNIFDDTTNKNIHPLETPLIEAKSSTTSKTSTPLSSTKQVLIGPCTPQNTITQLKIASSSLKTPSRNISLNKETSLNYEARRALD FEATTQQLSIDDQCGNVIEAEGSLGNIATSDTFDHLLPHLKKQRTKSSSSSKEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52950			Nucleic acid-binding, OB-fold-...		Potri.019G061550 [exp]	0	1
AT3G10680			HSP20-like chaperones superfam...		Potri.008G014000 [exp]	9.11	0.8829
AT1G65810			P-loop containing nucleoside t...		Potri.004G077600 [exp]	13.19	0.8763
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.013G028300 [exp]	16.97	0.7790	Pt-HPT2.2
AT3G48770			DNA binding;ATP binding (.1)		Potri.012G103700 [exp]	18.43	0.8128
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Potri.010G082200 [exp]	18.97	0.8343
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191101 [exp]	19.59	0.8730
					Potri.003G152100 [exp]	20.04	0.7819
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.008G171700 [exp]	22.09	0.8161
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191200 [exp]	22.80	0.8665
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.010G065800 [exp]	22.97	0.7998

Compare expression of checked genes

Potri.019G061550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.