Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58320 180 / 1e-49 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT5G05180 149 / 1e-39 unknown protein AT2G30500 96 / 7e-21 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT3G22790 61 / 2e-09 Kinase interacting (KIP1-like) family protein (.1) AT2G22560 58 / 2e-08 Kinase interacting (KIP1-like) family protein (.1) AT1G03080 58 / 2e-08 kinase interacting (KIP1-like) family protein (.1) AT4G02710 57 / 3e-08 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 52 / 8e-07 kinase interacting (KIP1-like) family protein (.1) AT1G03470 51 / 9e-07 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G10500 52 / 1e-06 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158100 [exp] 310 / 7e-98 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 264 / 2e-80 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.002G049600 [exp] 65 / 9e-11 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 64 / 2e-10 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 63 / 4e-10 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 62 / 4e-10 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 57 / 4e-08 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.007G011300 [exp] 56 / 4e-08 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G207700 [exp] 56 / 6e-08 AT2G47920 136 / 2e-37 Kinase interacting (KIP1-like) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029012 [exp] 239 / 1e-72 AT5G05180 146 / 5e-39 unknown protein Lus10034251 [exp] 237 / 1e-71 AT5G05180 149 / 4e-40 unknown protein Lus10034448 [exp] 237 / 9e-71 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10019111 [exp] 231 / 1e-68 AT5G58320 347 / 3e-113 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10030507 [exp] 201 / 8e-59 AT5G05180 120 / 3e-30 unknown protein Lus10012861 [exp] 195 / 2e-56 AT5G05180 124 / 2e-31 unknown protein Lus10012862 [exp] 94 / 1e-21 ND 37 / 0.008 Lus10039359 [exp] 66 / 7e-11 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 60 / 4e-09 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 60 / 4e-09 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [poplar] [flax] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.019G061600.2 pacid=42773931 polypeptide=Potri.019G061600.2.p locus=Potri.019G061600 ID=Potri.019G061600.2.v4.1 annot-version=v4.1 ATGGTAAAGATGTTGATGACAGAGATGGAGCGGAGTGTCAAACAAATGCTGAAACTGATTGAAGAAGATGGTGTATCTCTTGCAAAGAAGGCTGAAATGT GTAGGCAGACCAGGCCAGATTTGATTTCAAAAATTAAGGAATTCAACAGCATGCAACAATCATTGGCTGAGTGCTATGAGTACGTGACAACTGAATTAAC CAATAGCATACCATCAGAGTTCGATGTGCAGGGTGTTGACAATTCTGAATCAGGCCATGGCCATGACCCTCCTCTGCTGACTCCCGATCAGAAGCTGGGT TTTCACAAGGCTAGTAATCGAGCCCCTTCTGTCAGCTCCCATGGTGCTAGCTCTGATCTTTCATTAAAGGAAGGATCTGAATCATTCTCATTTTCATCAT CAGATTCTGAATCAGAATCTTTCAATTCTTCTGGGAATGCCTACTATAGCCTCCCAGTGAACACTGATCGTAGTGAATTGCACAAGAAGATTATTGTTAT GGGGACTGATCTCTCAAGTATGGAAGAGAAGCTCCGGATGCATGAAGAAGAGAATAGAGATAGCATGCTGAACGGAGAGGAAAATAGAAATTATGAAGAG CTACTGAGTAGAATAATCGGCTATGAAGAAGAGCTGAGGCTTACAAAGGTAAAACTCCAGCTATCAGAAGATGACGTTACCAGGTTGAAAATCGAGCTTG AGAAGAGTGTGTTTTTTAGGGATCTTTCAGGGACTTTGCAAGCTCAGCTTGAATTGGCACTTAAAGACATCCAGATGAGGGAGGATGATCTTCAAGTGGA AAGAAAAAGGGTGTTGGAGCTGCAAAAGAAAGTAGCTGAAGGTTCAGAAGAATTGCAAGGTCAGCTTAAGGTGGCTGAAGAAGAAATAACAATGCTGAAT GCCAAACTCAATACAGAGAGCAGGCGCGTTCTAGACTTGCAGGAGAGGATCACATGCTACAAAAGTGATCTATCTGATCATGATCATGAAATCAAGGCAT TAAAAGATGCACAGGAAAATCTCTCTGTGGAGAAGGCACACCTGCAATCTGAGATACTTGACCTGTCCGAGAAACAGAACATGTTGGAGGTAAAACTGAG AGAATGGGATTTACAAGGAAAATTCATGGAGGATAAATTGAGGCAATGTGAGGCTGAGAAAATGCAAATGAAAAATTTGCATGATGCCCAGGAGATTGCT TTGCAAGGGGAGATCAGTCAGTTGAAGGTGGAACTAATTGACCGAGGTGAGCATGTGGAAGTTCTGAACAAAAAATTTGACAGCCTCAAGTCTAAATACG ATATGCTTATGGCCGAGAAAGATGGGATGAGTGCTAAAGTAAACACACTCATTGCAGATGTGAATTCCCGAGACAATCAAATAAGGCAAATGGAGGGGCA TCTGCAACAGTTGCATACTGAACATGAAAAATTGATTGCTGGGTCTCAAAGTTCACGGAAGCTAGTGGACGAGTTAAGATTGAAAGTAGTGGAGCTGGAG AAGGAGGTGGACGGGCAGAGAGTCGAGCTTTCAGCTGTGGCTGAGGAGAAAAGGGCGGCAATTCGACAACTATGCTTCTCTCTGGAGCATTATAGGAGTG GGTATAAAGAACTTCGTGAAGCATTTCTTGGGCACAAACGGCATTCAGTCATGGCTTCATAA
AA sequence Show only first row Show all	>Potri.019G061600.2 pacid=42773931 polypeptide=Potri.019G061600.2.p locus=Potri.019G061600 ID=Potri.019G061600.2.v4.1 annot-version=v4.1 MVKMLMTEMERSVKQMLKLIEEDGVSLAKKAEMCRQTRPDLISKIKEFNSMQQSLAECYEYVTTELTNSIPSEFDVQGVDNSESGHGHDPPLLTPDQKLG FHKASNRAPSVSSHGASSDLSLKEGSESFSFSSSDSESESFNSSGNAYYSLPVNTDRSELHKKIIVMGTDLSSMEEKLRMHEEENRDSMLNGEENRNYEE LLSRIIGYEEELRLTKVKLQLSEDDVTRLKIELEKSVFFRDLSGTLQAQLELALKDIQMREDDLQVERKRVLELQKKVAEGSEELQGQLKVAEEEITMLN AKLNTESRRVLDLQERITCYKSDLSDHDHEIKALKDAQENLSVEKAHLQSEILDLSEKQNMLEVKLREWDLQGKFMEDKLRQCEAEKMQMKNLHDAQEIA LQGEISQLKVELIDRGEHVEVLNKKFDSLKSKYDMLMAEKDGMSAKVNTLIADVNSRDNQIRQMEGHLQQLHTEHEKLIAGSQSSRKLVDELRLKVVELE KEVDGQRVELSAVAEEKRAAIRQLCFSLEHYRSGYKELREAFLGHKRHSVMAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58320			Kinase interacting (KIP1-like)...		Potri.019G061600 [exp]	0	1
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	1.00	0.8659
AT4G18820			AAA-type ATPase family protein...		Potri.011G071300 [exp]	3.46	0.8043
AT2G33845			Nucleic acid-binding, OB-fold-...		Potri.011G114800 [exp]	3.60	0.8038
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.002G114700 [exp]	4.24	0.8239
AT3G44716			unknown protein		Potri.009G148200 [exp]	5.19	0.8159
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.010G103000 [exp]	5.47	0.8024
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Potri.014G175350 [exp]	5.83	0.8438
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.002G052700 [exp]	10.81	0.7599
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.014G070100 [exp]	13.52	0.8329
AT4G39790			Protein of unknown function (D...		Potri.005G077700 [exp]	14.56	0.7445

Compare expression of checked genes

Potri.019G061600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.