Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08720 197 / 8e-62 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 178 / 2e-54 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G58140 67 / 2e-13 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G20830 67 / 2e-13 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G51170 66 / 5e-13 Protein kinase superfamily protein (.1) AT3G52890 65 / 9e-13 KIPK KCBP-interacting protein kinase (.1.2) AT2G26700 65 / 9e-13 PID2 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G25250 64 / 1e-12 AtOXI1, OXI1, AGC2-1 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G03640 64 / 2e-12 Protein kinase superfamily protein (.1) AT2G36350 64 / 2e-12 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109600 [exp] 204 / 2e-64 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 201 / 5e-63 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G073700 [exp] 176 / 1e-53 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.003G205800 [exp] 66 / 4e-13 AT3G20830 475 / 5e-167 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.009G146700 [exp] 66 / 5e-13 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.009G170550 [exp] 65 / 5e-13 AT5G58140 400 / 1e-134 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G344600 [exp] 66 / 6e-13 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.004G209700 [exp] 66 / 6e-13 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G018300 [exp] 65 / 1e-12 AT3G20830 469 / 8e-165 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021386 [exp] 213 / 2e-70 AT3G08720 445 / 4e-157 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10014181 [exp] 196 / 6e-62 AT3G08720 307 / 1e-100 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10025213 [exp] 198 / 8e-60 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 186 / 2e-56 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10036653 [exp] 172 / 8e-51 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10022732 [exp] 135 / 2e-38 AT3G08720 401 / 1e-137 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10001604 [exp] 69 / 5e-14 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10033029 [exp] 68 / 9e-14 AT2G26700 572 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10030051 [exp] 67 / 1e-13 AT2G26700 577 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031259 [exp] 66 / 1e-13 AT3G20830 257 / 2e-84 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.019G061800.2 pacid=42774012 polypeptide=Potri.019G061800.2.p locus=Potri.019G061800 ID=Potri.019G061800.2.v4.1 annot-version=v4.1 ATGTTAACTGATTTTGGCCTGGCAAAGCAGTTTGATGAAAATACAAGGTCAAACTCTACGTGTGGAACATTAGAATACATGTCTTCAGAAACTGTTCTCG CGAAAGGTCATGATAAGGCTACAGACTGGTGGAGTGTTGGAATCCTGCTTTACGAAATGCTCACTGGAAAGCTGCTGCAGAAAGAAACAAGCAAGCGCCT TGGGAAGGGACCAAATGGCAGTGAGGAGATAGAACACCATAAGTGGTTCCAGTCAATCAACTGGAAGAAATTGGAGGCCCGTGAAATCAGGCCTAGTGTT CTCCCTGAAGTGGCAGGTAAGCACTGTGTTGCCAACTTTGAGGAGCGCTGGACTAGCATGCCAGTTCTGGATTCTCCAGCATCTAGCCCAAAATCCTGTG ACAAACCTTTTCAAGGGGCTCTCTTATGTGAGACCAGCTACTTCTCTTCGGGGGAATGTATGAAGTTCGTTCGGCCTTGA
AA sequence Show only first row Show all	>Potri.019G061800.2 pacid=42774012 polypeptide=Potri.019G061800.2.p locus=Potri.019G061800 ID=Potri.019G061800.2.v4.1 annot-version=v4.1 MLTDFGLAKQFDENTRSNSTCGTLEYMSSETVLAKGHDKATDWWSVGILLYEMLTGKLLQKETSKRLGKGPNGSEEIEHHKWFQSINWKKLEAREIRPSV LPEVAGKHCVANFEERWTSMPVLDSPASSPKSCDKPFQGALLCETSYFSSGECMKFVRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.019G061800 [exp]	0	1
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084100 [exp]	3.46	0.9215
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.009G121600 [exp]	4.00	0.9177
					Potri.003G143300 [exp]	7.34	0.7613
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016400 [exp]	7.48	0.7669
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084501 [exp]	8.12	0.7581
AT1G53050			Protein kinase superfamily pro...		Potri.005G086900 [exp]	10.19	0.7560
AT1G43760			DNAse I-like superfamily prote...		Potri.019G047975 [exp]	11.31	0.7507
AT5G05800			unknown protein		Potri.001G370432 [exp]	12.00	0.7440
AT3G63230			Protein of unknown function (D...		Potri.002G050100 [exp]	12.24	0.7167
AT3G22210			unknown protein		Potri.016G018650 [exp]	12.40	0.7260

Compare expression of checked genes

Potri.019G061800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.