Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58300 750 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 701 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 686 / 0 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 582 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 550 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 477 / 3e-161 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 478 / 2e-160 RKL1 receptor-like kinase 1 (.1) AT5G53320 465 / 2e-156 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 451 / 1e-150 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 448 / 5e-149 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G131500 [exp] 822 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 815 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 788 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 598 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 598 / 0 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 588 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 572 / 0 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 554 / 0 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 496 / 8e-168 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035012 [exp] 798 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 790 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 771 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 768 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029005 [exp] 659 / 0 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025210 [exp] 630 / 0 AT3G08680 669 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021383 [exp] 623 / 0 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 580 / 0 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032351 [exp] 578 / 0 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033936 [exp] 540 / 0 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G062100.1 pacid=42774675 polypeptide=Potri.019G062100.1.p locus=Potri.019G062100 ID=Potri.019G062100.1.v4.1 annot-version=v4.1 ATGCAATGCCTTTTCTTTAACAAAAAAAAGAAGGAGAATTTAACTTTTTGCTTTCTCTTTACATCAATCTTTTTTTTCTCTTGGATTCTTTATCACCACT TTGCTTTTGACATGTGCTTCCTCTGGAGAGCACCGGGAGCTGCTGAAGCCAGAAACAAGCACAGTTCATTCCAAACTGAGCAAATATCAATGAAGCTCCT GTCCTCCATTTCCACAGTTGTTTTCCTTTTCTTCATACTTCCAGTTGTGCCTCAGATTATAGCTGACCTGAATTCTGACAGACAAGCACTTCTTGACTTT GCTGCTGCTGTTCCACACATCCGGAAACTCAATTGGAATGCTTCTACCTCAGTTTGCACCTCCTGGGTTGGCATTACCTGCAACACAAATGGAACCGGGG TGGTTGCTGTCCATCTTCCAGGCGTTGGACTGTATGGCCCTATCCCAGCCAACACTATAGGAAGACTTAATTCTCTAAAGATTCTCAGTCTCCGATCCAA TAGCCTCAATGGAAAGCTTCCTTCTGATATCCCCTCCCTCCCTTCCCTTCAGCACCTTTACCTGCAACAGAATAATTTCTCTGGCGTCTTCCCTGCCTTG CTCTCCCTTCAACTCAATGTCTTGGATCTTTCCTTTAACTCCTTCACTGGGAGCATACCTCCCACCATACAGAATCTGACTCAGCTCACTGCATTATACC TCCAAAACAATTCCATCTCCGGAGCCATACCCGATATCAACCTTCCAAGACTCAAGGCTTTAAATCTGAGCTTTAACTATTTCAATGGTACAATTCCATC ATCTTTCCAGAAGTTCTCCTATTATTCATTCGTTGGGAACTCTCTATTATGTGGACTGCCTCTCAAGCGTTGCCCCACCATCTCCTCTTCACCTTCTCCT TCCCCAAACGACTTTCTAAACCCCCCAACAAAGCCCCAATCTCACACTGCTTCCAACAAGAAACTTGGTTCAAATTCTATAATTGCTATAGCAATTGGGG GATCAGCTGTGCTATTTCTCATAATTATGGTTATCTTTGTTTGCTTCTTGAAAAGAAAAGACGGGGCAAGAAACACAGTATTGAAAGGGAAGGCTGAGAG CGAGAAGCCTAAGGATTTTGGTAGTGGGGTGCAGGAGGCTGAGAAGAACAAACTGTTCTTCTTTGAAGGCTGTTCTTATAACTTTGATCTTGAGGATTTG TTGAGGGCTTCAGCTGAAGTTCTTGGTAAAGGGAGTTATGGAACAGCCTACAAGGCAGTTTTGGAGGACGGGACATCAGTGGTGGTGAAAAGGTTGAAGG AAGTTGCTGCTGGAAAGAAGGAATTTGAGCAACAGATGGAAGTTATAGGGAGAGTTGGACAGCACCCTAATATTGTTCCACTCCGTGCTTATTACTACTC CAAAGATGAGAAGCTTCTAGTTCACAACTACATGTCAGCAGGCAGCTTATCTGCATTCCTGCATGGCAATAGGGCTGGAGGTAGAACTTCACTGGATTGG AATGCAAGAGTGAAGATATGCCTTGGGACTGCCAGGGGAATTGCCCGCATTCATTCTGAAGGTGGTGCCAAATTTTTCCATGGTAACATCAAGGCTTCCA ATGTACTCCTCACCCCAGATCTTGATGGGTGCATCTCTGATGTTGGATTGGCTCCTCTGATGAACTTCCCCACAACCATGTATAGAACCATTGGATATCG TGCTCCGGAGGTGATTGAAACACGCAAAGCCTCTCAGAAATCTGATGTTTATAGTTTTGGGGTGCTCCTCCTGGAAATGCTGACTGGGAAAGCCCCACTA CAAGTTCCAGGACATGACAGTGTGGTTGATCTTCCAAGATGGGTGCGGTCTGTTGTCAGAGAAGAATGGACTGCAGAGGTTTTTGATGTTGAGCTTGTAA GGCACCAAAATATTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCTTTGGCTTGTGTGGCAAAAGCACCAGATATGCGTCCCAAAATGGATGAAGTTGT TAGGATGATAGAGGAAATTCAACATTCTGACTCAAAGAACAGGTCATCCTCCGATGCTGAGTCTAATGTCCAAACTCCATGA
AA sequence Show only first row Show all	>Potri.019G062100.1 pacid=42774675 polypeptide=Potri.019G062100.1.p locus=Potri.019G062100 ID=Potri.019G062100.1.v4.1 annot-version=v4.1 MQCLFFNKKKKENLTFCFLFTSIFFFSWILYHHFAFDMCFLWRAPGAAEARNKHSSFQTEQISMKLLSSISTVVFLFFILPVVPQIIADLNSDRQALLDF AAAVPHIRKLNWNASTSVCTSWVGITCNTNGTGVVAVHLPGVGLYGPIPANTIGRLNSLKILSLRSNSLNGKLPSDIPSLPSLQHLYLQQNNFSGVFPAL LSLQLNVLDLSFNSFTGSIPPTIQNLTQLTALYLQNNSISGAIPDINLPRLKALNLSFNYFNGTIPSSFQKFSYYSFVGNSLLCGLPLKRCPTISSSPSP SPNDFLNPPTKPQSHTASNKKLGSNSIIAIAIGGSAVLFLIIMVIFVCFLKRKDGARNTVLKGKAESEKPKDFGSGVQEAEKNKLFFFEGCSYNFDLEDL LRASAEVLGKGSYGTAYKAVLEDGTSVVVKRLKEVAAGKKEFEQQMEVIGRVGQHPNIVPLRAYYYSKDEKLLVHNYMSAGSLSAFLHGNRAGGRTSLDW NARVKICLGTARGIARIHSEGGAKFFHGNIKASNVLLTPDLDGCISDVGLAPLMNFPTTMYRTIGYRAPEVIETRKASQKSDVYSFGVLLLEMLTGKAPL QVPGHDSVVDLPRWVRSVVREEWTAEVFDVELVRHQNIEEEMVQMLQIALACVAKAPDMRPKMDEVVRMIEEIQHSDSKNRSSSDAESNVQTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G062100 [exp]	0	1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.006G131100 [exp]	1.41	0.9008
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Potri.008G061000 [exp]	3.87	0.8944
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.007G018100 [exp]	6.48	0.8997	Pt-BGAL3.1
AT3G13410			unknown protein		Potri.012G124888 [exp]	7.93	0.8911
AT5G50175			unknown protein		Potri.015G083900 [exp]	8.83	0.8967
AT4G21450			PapD-like superfamily protein ...		Potri.013G147800 [exp]	12.80	0.8958
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	14.49	0.8919
AT2G01210			Leucine-rich repeat protein ki...		Potri.010G120100 [exp]	15.87	0.8737
AT2G26730			Leucine-rich repeat protein ki...		Potri.018G074300 [exp]	16.97	0.8601
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.003G161700 [exp]	25.49	0.8812	CYP51G5,CYP51.1

Compare expression of checked genes

Potri.019G062100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.