Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GLX2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10850 415 / 1e-148 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT1G06130 183 / 4e-56 GLX2-4 glyoxalase 2-4 (.1.2) AT2G31350 179 / 1e-54 GLX2-5 glyoxalase 2-5 (.1.2) AT2G43430 161 / 5e-48 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2) AT1G53580 82 / 4e-18 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026500 [exp] 174 / 7e-53 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.007G131300 [exp] 168 / 1e-50 AT1G06130 503 / 0.0 glyoxalase 2-4 (.1.2) Potri.005G204800 [exp] 81 / 1e-17 AT1G53580 395 / 3e-139 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.001G380100 [exp] 79 / 4e-17 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029086 [exp] 441 / 1e-158 AT3G10850 443 / 1e-159 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10034259 [exp] 438 / 2e-157 AT3G10850 440 / 2e-158 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029004 [exp] 394 / 4e-140 AT3G10850 397 / 1e-141 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10017706 [exp] 181 / 2e-55 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2) Lus10039860 [exp] 172 / 6e-52 AT1G06130 493 / 6e-177 glyoxalase 2-4 (.1.2) Lus10033662 [exp] 143 / 4e-41 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2) Lus10018625 [exp] 116 / 1e-30 AT2G31350 418 / 5e-148 glyoxalase 2-5 (.1.2) Lus10020760 [exp] 77 / 3e-16 AT1G53580 417 / 3e-148 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10007336 [exp] 57 / 3e-09 AT1G53580 385 / 4e-135 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [poplar] [flax] Metallo-HOrase PF00753 [poplar] [flax] Lactamase_B Metallo-beta-lactamase superfamily CL0381 [poplar] [flax] Metallo-HOrase PF16123 [poplar] [flax] HAGH_C Hydroxyacylglutathione hydrolase C-terminus
Representative CDS sequence Show only first row Show all	>Potri.019G062600.1 pacid=42773464 polypeptide=Potri.019G062600.1.p locus=Potri.019G062600 ID=Potri.019G062600.1.v4.1 annot-version=v4.1 ATGAAGATACTTCACGTTCCTTGCTTAGAAGACAACTACTCTTACCTAATCATTGATGAGAGTACTAAAGAAGCAGCGGTTGTTGATCCAGTCGAGCCCG AGAAGCTTGTTAATGCTGCCAATGAACATGGGCTCCATCTCAAGCTCGTCCTCACTACTCACCATCACTGGGATCATGCTGGGGGGAATGAGAAGATAAA GGAGATGGTGCCTGGAATTAAGGTGTATGGTGGCTCACTTGATAATGTTAAGGGTTGCACTAATAAAGTGGAGAATGGTGACAAGGTCTCACTTGGTGCT GATGTTAATATTTTGGCTCTTCACACTCCTTGTCACACCAAAGGCCACATAAGTTATTATGTGACTGGCAAGGAGGGAGAGGACCCTGCTGTTTTTACTG GCGACACACTGTTTATTGCTGGTTGTGGGAAATTTTTTGAAGGCACAGCAGAACAGATGTATCAGTCACTTTGTGTAACATTGGGTTCATTGCCAAAGCC TACTCAAGTTTATTGTGGCCACGAGTATACTGTGAAGAACTTGCAGTTTGCTTTGACGGTTGAACCAGACAGTGTAAAGATTCAGGAGAAGCTATCATGG GCTCAGAAACAACGCAGAGCAGGGCTCCCCACCATTCCTTCAACTATAGAGGAAGAAATGGAGACAAATCCATTCATGCGTGCAGAGCTTCCAGATGTTC AGGCAAAGGTTGGCTGCCACTCCCCCGTTGAAGCTCTTCGAAAGATAAGGCTAATGAAGGACAACTGGAGAGGCTAG
AA sequence Show only first row Show all	>Potri.019G062600.1 pacid=42773464 polypeptide=Potri.019G062600.1.p locus=Potri.019G062600 ID=Potri.019G062600.1.v4.1 annot-version=v4.1 MKILHVPCLEDNYSYLIIDESTKEAAVVDPVEPEKLVNAANEHGLHLKLVLTTHHHWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTNKVENGDKVSLGA DVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKNLQFALTVEPDSVKIQEKLSW AQKQRRAGLPTIPSTIEEEMETNPFMRAELPDVQAKVGCHSPVEALRKIRLMKDNWRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Potri.019G062600 [exp]	0	1	Pt-GLX2.1
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Potri.011G130533 [exp]	1.41	0.7875
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.002G228300 [exp]	5.47	0.7319
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.002G118900 [exp]	6.63	0.7448
					Potri.008G020500 [exp]	11.13	0.7815
AT3G03341			unknown protein		Potri.017G128600 [exp]	11.22	0.7487
AT3G15460			Ribosomal RNA processing Brix ...		Potri.001G403100 [exp]	16.52	0.7265
AT5G54855			Pollen Ole e 1 allergen and ex...		Potri.011G137100 [exp]	16.97	0.7588
					Potri.015G106700 [exp]	16.97	0.7244
					Potri.005G150300 [exp]	17.86	0.7183
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.014G016500 [exp]	18.38	0.7235

Compare expression of checked genes

Potri.019G062600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.