Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40810 609 / 0 ATATG18C homolog of yeast autophagy 18C (.1.2) AT3G56440 599 / 0 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT3G62770 449 / 5e-157 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT5G05150 373 / 8e-128 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT4G30510 110 / 1e-27 ATATG18B ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) AT1G03380 50 / 2e-06 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT5G54730 47 / 2e-05 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT1G54710 47 / 2e-05 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G207865 [exp] 480 / 9e-169 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.014G132300 [exp] 474 / 2e-166 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 408 / 2e-141 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.013G018400 [exp] 407 / 3e-141 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.018G101200 [exp] 142 / 3e-38 AT4G30510 432 / 2e-152 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) Potri.013G028200 [exp] 55 / 6e-08 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.005G040300 [exp] 53 / 3e-07 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.001G417000 [exp] 52 / 5e-07 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.011G132700 [exp] 52 / 8e-07 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003694 [exp] 603 / 0 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10001580 [exp] 600 / 0 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10041353 [exp] 474 / 1e-166 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036577 [exp] 472 / 8e-166 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10031500 [exp] 410 / 6e-141 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10004501 [exp] 408 / 2e-140 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10015178 [exp] 400 / 2e-137 AT3G62770 489 / 4e-172 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10029900 [exp] 397 / 3e-136 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036618 [exp] 55 / 1e-07 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10000925 [exp] 53 / 4e-07 AT1G54710 878 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G062800.4 pacid=42773450 polypeptide=Potri.019G062800.4.p locus=Potri.019G062800 ID=Potri.019G062800.4.v4.1 annot-version=v4.1 ATGACCATGAGTTCAACTGTTTCAACTTCTCAAGGATTCCTTCCCCAGGCAAGGCATGGTTCGTTTGAATCCTCAAATGTTCTTGCTTCTGGTTCTTTAG GTCAGCCCGAGCTGGAATCCAATGGTAGCAATGAAGTGGAATTGATTTCTGCATCCTGGAACCAGGATTATGGCTGCTTTGCTGCTGGCACAAGCCATGG CTTTCGCATTTATAATTGTGAGCCTTTTAAGGAAACTTTCAGACGTGATCTCAAAAGTGGGGGATTCAAAATTGTTGAGATGCTGTTCCGGTGCAACATT CTGGCACTTGTTGGGGCTGATGCTAATTCTCAGTATCCTCCAAACAAAGTTTTGATCTGGGATGATCATCAGAGCCGGTGCATTGGTGAATTTTCATTTA GGTCTGAGGTTCGGTCTGTGAAGTTAAGGCGGGATCGCATTGTTGTTGTTCTTGAGCACAAGTTATATGTTTATAATTTCATGGATTTGAAGCTTCTTCA TCAGATTGAGACTCTGGCAAATCCCAGAGGACTGTGCTGCCTTTCTCATGATTCAAATACATTTGTGTTGGCGTGCCCTGGGCTTCATCGGGGCCAGGTC CGAATTGAACACTTTGGGTTGAATGTCATGAAGTTGATTAATGCTCATGATTCTCATATTGCATGCTTGACCTTGACAATGGATGGCTTGCTTCTTGCGA CTGCTAGTACAAGGGGCACTTTGATAAGAATTTTCAATACAATGGATGGCACTCGTTTACAAGAGGTGAGAAGAGGAGTTGATAGAGCAGAGATTTATGG CATTGCACTCTCTCGGAATGTCCAGTGGTTGGCTGTATCGAGTGACAAAGGTACTGTTCATATCTTCAGTCTAAGAGTTCGAGTGGCTGGAGAGGACTCA TCCTCTCATCTGAGCCCTGCTCAGGGCCCGGCATTGTTAGAACAGAATTCATCATCTTCCCTTGATGGCCTTATTTCTCCAAGCACTAGTGCGAATCCTG GCTCGTCATTGTCTTTTATGAGAGGGGTTTTGCCAAAGTATTTTAGTTCTGAGTGGTCATTTGCTCAGTTCCACTTGCCTGAAGACACTCAGTACATTGC AGCTTTTGCATCTCAGAATACTGTCATTATTGTTGGCATGAATGGGAGCTTTTACAGGTGCAGCTTTGATCCGGTTCATGGAGGACAGATGTTGCAGCAG GAATATGTCCGCTTTCTACAAACTGAGAGCCGGCCTGGATAG
AA sequence Show only first row Show all	>Potri.019G062800.4 pacid=42773450 polypeptide=Potri.019G062800.4.p locus=Potri.019G062800 ID=Potri.019G062800.4.v4.1 annot-version=v4.1 MTMSSTVSTSQGFLPQARHGSFESSNVLASGSLGQPELESNGSNEVELISASWNQDYGCFAAGTSHGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRCNI LALVGADANSQYPPNKVLIWDDHQSRCIGEFSFRSEVRSVKLRRDRIVVVLEHKLYVYNFMDLKLLHQIETLANPRGLCCLSHDSNTFVLACPGLHRGQV RIEHFGLNVMKLINAHDSHIACLTLTMDGLLLATASTRGTLIRIFNTMDGTRLQEVRRGVDRAEIYGIALSRNVQWLAVSSDKGTVHIFSLRVRVAGEDS SSHLSPAQGPALLEQNSSSSLDGLISPSTSANPGSSLSFMRGVLPKYFSSEWSFAQFHLPEDTQYIAAFASQNTVIIVGMNGSFYRCSFDPVHGGQMLQQ EYVRFLQTESRPG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Potri.019G062800 [exp]	0	1
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.010G100200 [exp]	2.00	0.7286	NTR1.3
AT5G04270			DHHC-type zinc finger family p...		Potri.010G226100 [exp]	3.46	0.6706
AT4G35860		ATGB2, AtRABB1b...	GTP-binding 2 (.1.2)		Potri.009G159600 [exp]	3.46	0.7019	Pt-ATGB2.1
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	3.87	0.6971
AT2G41690	HSF	AT-HSFB3, HSFB3	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.006G049200 [exp]	6.32	0.6750	Pt-HSFB3.1
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	10.95	0.6862
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.019G050000 [exp]	12.64	0.6225
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.018G013400 [exp]	16.49	0.5908
AT3G57710			Protein kinase superfamily pro...		Potri.002G003300 [exp]	18.30	0.5353
AT5G64500			Major facilitator superfamily ...		Potri.009G081100 [exp]	18.38	0.5977

Compare expression of checked genes

Potri.019G062800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.