Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20860 353 / 6e-116 FAD-binding Berberine family protein (.1) AT1G30760 336 / 4e-109 FAD-binding Berberine family protein (.1) AT5G44360 328 / 3e-106 FAD-binding Berberine family protein (.1) AT5G44440 325 / 7e-105 FAD-binding Berberine family protein (.1) AT2G34790 324 / 2e-104 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44410 322 / 9e-104 FAD-binding Berberine family protein (.1) AT5G44400 322 / 2e-103 FAD-binding Berberine family protein (.1) AT5G44390 321 / 3e-103 FAD-binding Berberine family protein (.1) AT1G34575 319 / 1e-102 FAD-binding Berberine family protein (.1) AT5G44380 316 / 4e-101 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158400 [exp] 362 / 3e-119 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 361 / 1e-118 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161800 [exp] 357 / 3e-117 AT5G44360 550 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162916 [exp] 357 / 4e-117 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163000 [exp] 355 / 1e-116 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 355 / 2e-116 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 351 / 6e-115 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 349 / 4e-114 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G464800 [exp] 349 / 4e-114 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010643 [exp] 527 / 0 AT5G44440 385 / 2e-128 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 358 / 5e-118 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10032943 [exp] 350 / 3e-114 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 342 / 3e-111 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 336 / 8e-109 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10009009 [exp] 330 / 9e-107 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 326 / 3e-105 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10036147 [exp] 325 / 7e-105 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023361 [exp] 325 / 3e-104 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10026290 [exp] 322 / 2e-103 AT5G44390 473 / 1e-162 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.019G063400.1 pacid=42773709 polypeptide=Potri.019G063400.1.p locus=Potri.019G063400 ID=Potri.019G063400.1.v4.1 annot-version=v4.1 ATGGCTAACTTGATGAAATACCCATCTCCTCTGTTTCTCTTCATGTCCTTTGCTCTTGTATTTCCATCTCTATGTGCACCAGAGGACCAAATTACATCTT GCTTAACTACACATGACATAAACAACTTCACTACGTTGCCTAGCACAAAAAAAGATGACGACTCAAAAACATACTATAAGATCCTTGATTTCTCCATTCA AAACCTTCGCTTCACAGAACCAACAATTGCCAAGCCATTAGCCATTATCCTACCTGGGAGTTTAGATGAGTTAGTCAAGAGTGTGATGTGTTGTAGGGAA GGGTTGTTAGAAATAAGGGTAAGGTGTGGTGGGCACAGCTATGAGGGGACTTCATCAGTAGCTAATGATGGAGCTCCTTTTGTGATTATAGACATGATGA ATCTGAACAAAGTTTCAGTGCATTTGGAGACAGAAACGGCATGGGTGGAAGGAGGTGCAACCCTTGGTGAGACTTACTCAGCTATTTCTGAGGCAAGCAG CATTCATGGGTTCTCAGCTGGATCATGTCCGACTGTTGGAGTTGGTGGTCATATTGGAGGAGGTGGATTTGGGCTATTGTCTAGAAAGTATGGACTTGCA GCAGATAATGTGGTTGATGCCCTTCTTATCGATGCCAATGGACGTTTGTTAGACAGAAAATCCATGGAAGAGGATGTGTTTTGGGCTATTAGAGGTGGCG GAGGAGGTGCATGGGGCATTATTTATGCTTGGAAAATAAGGTTGCTGAAAGTGCCCGAAGTTGTCACTGGTTTTATAGTCTCTAGACCTGGCACAAAATA CCAAGTAGCCGAGTTAGTGAATGGTTGGCAAGGGGTAGCACCCAGCATGGATGGAGATTTTTACTTGTCATGCTTTGTGGGAGCCGGTCTGCCAGGGACA AAAACTAGAGGAATATCAGCTACATTTAAAGGGTTTTATCTAGGTCCGAGAAATGAAGCTGTATCTATCCTAAATCAAGTTTTTCCTGAGCTGGGTATTG AAACAGAAGATTGCAAAGAAATGACTTGGATAGAATCAATCCTATTCTTCTCTGGCTTAAGTGATGGAAGCTTAGTGTCCGACTTGAAAAATCGGTATAC GGAAGAGAAGAACTACTTCAAGGCCAAATCAGACTATGTGAGGAGAAATATTTCTTTCGAGGGCATAAGAACAGCTCTAGACATACTTGAAAAGGAGCCT AAAGGGTATGTCATCTTGGACCCTTACGGAGGGATTATGCAGAATATAAGCAGCGATGCCATTGCCTTCCCTCACAGAGAGGGTAACCTTTTCACAATTC AGTACCTGGTGGAATGGAAAGAGAGAGATGACAACAAAAGCAACGACTACATTAACTGGATAAGAAAATTTTATAATGCAATGACACCCTTTGTGTCCTT CGGTCCGAGGGCTGCTTATATCAATTACATGGACTTCGACCTTGGAGTGATGGAGTTGCTTCATGACAAAACCAGTATGGTTCCAGCAAGAGATGCTGTC GAGGTTGCTAGGGTTTGGGGAGAAAAGTACTTCTTGAGAAACTACGATAGGTTGGTTGAAGTCAAGACATATATTGATCCAGACAACGTTTTCAGTAATC AACAAAGCATCCCCCCTGCGGTGTCCTCGGCGGTGAGTTTCAGAGCCGAGATTTAA
AA sequence Show only first row Show all	>Potri.019G063400.1 pacid=42773709 polypeptide=Potri.019G063400.1.p locus=Potri.019G063400 ID=Potri.019G063400.1.v4.1 annot-version=v4.1 MANLMKYPSPLFLFMSFALVFPSLCAPEDQITSCLTTHDINNFTTLPSTKKDDDSKTYYKILDFSIQNLRFTEPTIAKPLAIILPGSLDELVKSVMCCRE GLLEIRVRCGGHSYEGTSSVANDGAPFVIIDMMNLNKVSVHLETETAWVEGGATLGETYSAISEASSIHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLA ADNVVDALLIDANGRLLDRKSMEEDVFWAIRGGGGGAWGIIYAWKIRLLKVPEVVTGFIVSRPGTKYQVAELVNGWQGVAPSMDGDFYLSCFVGAGLPGT KTRGISATFKGFYLGPRNEAVSILNQVFPELGIETEDCKEMTWIESILFFSGLSDGSLVSDLKNRYTEEKNYFKAKSDYVRRNISFEGIRTALDILEKEP KGYVILDPYGGIMQNISSDAIAFPHREGNLFTIQYLVEWKERDDNKSNDYINWIRKFYNAMTPFVSFGPRAAYINYMDFDLGVMELLHDKTSMVPARDAV EVARVWGEKYFLRNYDRLVEVKTYIDPDNVFSNQQSIPPAVSSAVSFRAEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20860			FAD-binding Berberine family p...		Potri.019G063400 [exp]	0	1
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.005G108300 [exp]	3.31	0.9196
AT3G60750			Transketolase (.1.2)		Potri.010G224600 [exp]	7.54	0.7977
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283700 [exp]	8.24	0.8903
AT4G27220			NB-ARC domain-containing disea...		Potri.019G011169 [exp]	8.48	0.8545
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038000 [exp]	8.48	0.8735
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.001G069948 [exp]	16.52	0.8863
AT4G34880			Amidase family protein (.1)		Potri.004G171000 [exp]	21.49	0.8362
AT5G53742			Protein of unknown function (D...		Potri.009G153700 [exp]	22.62	0.8435
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.010G143500 [exp]	24.49	0.8760
AT2G37240			Thioredoxin superfamily protei...		Potri.008G113000 [exp]	25.88	0.8810

Compare expression of checked genes

Potri.019G063400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.