Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26590 682 / 0 MATE efflux family protein (.1) AT1G12950 667 / 0 RSH2 root hair specific 2 (.1) AT5G38030 655 / 0 MATE efflux family protein (.1) AT1G23300 628 / 0 MATE efflux family protein (.1) AT1G47530 525 / 0 MATE efflux family protein (.1) AT4G00350 473 / 9e-163 MATE efflux family protein (.1) AT4G25640 447 / 2e-153 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT3G21690 436 / 6e-149 MATE efflux family protein (.1) AT1G11670 436 / 1e-148 MATE efflux family protein (.1) AT1G61890 428 / 6e-146 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G187100 [exp] 714 / 0 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 461 / 2e-158 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.015G147600 [exp] 460 / 2e-158 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.012G144900 [exp] 459 / 1e-157 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.011G002900 [exp] 452 / 2e-155 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 451 / 7e-155 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 449 / 6e-154 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 438 / 8e-150 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 434 / 8e-148 AT1G11670 669 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036854 [exp] 728 / 0 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 715 / 0 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 707 / 0 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 686 / 0 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 607 / 0 AT1G23300 598 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 536 / 0 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 523 / 0 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 491 / 2e-170 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042344 [exp] 490 / 6e-170 AT1G47530 521 / 0.0 MATE efflux family protein (.1) Lus10027504 [exp] 487 / 4e-169 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.019G063500.2 pacid=42774712 polypeptide=Potri.019G063500.2.p locus=Potri.019G063500 ID=Potri.019G063500.2.v4.1 annot-version=v4.1 ATGGCAGATTCCAGGCAGCCACTTCTCTCTCCAAGAGGGAACCAAAACGAAAGTGATGACCAACTCCTGTCACTTACCAGATCAATCACAAACAATTCAT TTGCCTCCTCCTTCGTTGCAGATGCCGATGACATCCAACCAATCAATAGTGTCCGCGATTTTTTTAGAGAATTCTGCAGGGAGTCCGTAAAGCTCTGGTT CCTAGCCGCCCCTGCCATCTTCACTACCGTATGCCAGTATTCCCTTGGCGCTATCACTCAAGTCTTTGCAGGCCATGTTGGCACTCTCGCGCTTGCTGCC GTCTCCATCGAGAACTCAGTCATCGCTGGCTTCTCCTTCGGTCTCATGCTTGGCATGGGAAGTGCTCTTGAAACATTATGTGGGCAAGCTTTCGGAGCTG GACAGCTTGATATGCTAGGAATTTATATGCAGAGATCATGGCTCATACTCAATACCACAGCCTTATTACTTAGTCTGGTTTACATCTTCTCAGCTCAACT CTTAAAGCTTATAGGCCAAACTGCATCCATATCAAAAGCAGCAGGGATGTTCTCGATCTGGATGTTACCACAATTGTTCGCCTACGCGTTTAACTTCCCA ATGGCAAAATTCTTGCAATCTCAGAGCAAGATCATGGTCATGGCTGTGATTTCAGTTGTGGTCTTGATTTTGCATACGGTTTTCAGCTGGTTGCTGATGA TCAAGTTGAAATGGGGTCTGGTGGGCGCAGCTGTGGTGTTGAATGCGTCATGGGTGATCATAGACATATCGCAGTTTGTGTATATTATCAGTGGAACCTG TGGTCGGGCGTGGAGTGGTTTCTCGTGGAAGGCCTTTCAAAATCTCTGGAGTTTTGTCAGGTTATCTCTTGCGTCCGCGGTGATGCTTTGCTTAGAGGTC TGGTATTTTATGGCATTGATACTCTTTGCTGGATATCTAAAGAACGCAGAAGTTGCGGTGGATGCCTTGTCGATCTGCATGAACATACTGGGATGGACGG TCATGGTAGCTTTGGGAATGAATGCAGCCATAAGTGTAAGAGTATCGAATGAACTGGGTGCTGCTCATCCGAGAACAGCAAAATTTGCACTGGTGGTGGC TGTTGTATCATCCTTCATCATTGGTCTCATTCTTGCAGCCATTCTTCTTATTTTCCGAAAGAGTTACCCATCTTTATTCTCAAGTGATCTGGATGTGCAA GAACTTGTTCAAGACTTGACACCATTGTTGGCCCTTTGCATTGTTATTGACAACGTTCAGCCAGTTCTCTCTGGTGTGGCTATTGGAGCTGGATGGCAGG CTGTTGTGGCCTATGTAAACATTGCGTGTTACTATATATTTGGGATCCCTTTGGGTCTCATATTGGGTTTCAAAGTCAAACTAGGAGTTAAGGGGATATG GTATGGAATGCTATCAGGGACTGTCCTCCAGACTATTATCCTCTTCTTGATAATTTATAAAACAAATTGGAACAAAGAGGCTTCTATTGCCGAAGACAGA ATAAGAAAATGGGGAGGGGACACAGATATCAAAGAAAACAGCGTCAAAAGACTTACAGCTACAGAGACTTGA
AA sequence Show only first row Show all	>Potri.019G063500.2 pacid=42774712 polypeptide=Potri.019G063500.2.p locus=Potri.019G063500 ID=Potri.019G063500.2.v4.1 annot-version=v4.1 MADSRQPLLSPRGNQNESDDQLLSLTRSITNNSFASSFVADADDIQPINSVRDFFREFCRESVKLWFLAAPAIFTTVCQYSLGAITQVFAGHVGTLALAA VSIENSVIAGFSFGLMLGMGSALETLCGQAFGAGQLDMLGIYMQRSWLILNTTALLLSLVYIFSAQLLKLIGQTASISKAAGMFSIWMLPQLFAYAFNFP MAKFLQSQSKIMVMAVISVVVLILHTVFSWLLMIKLKWGLVGAAVVLNASWVIIDISQFVYIISGTCGRAWSGFSWKAFQNLWSFVRLSLASAVMLCLEV WYFMALILFAGYLKNAEVAVDALSICMNILGWTVMVALGMNAAISVRVSNELGAAHPRTAKFALVVAVVSSFIIGLILAAILLIFRKSYPSLFSSDLDVQ ELVQDLTPLLALCIVIDNVQPVLSGVAIGAGWQAVVAYVNIACYYIFGIPLGLILGFKVKLGVKGIWYGMLSGTVLQTIILFLIIYKTNWNKEASIAEDR IRKWGGDTDIKENSVKRLTATET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26590			MATE efflux family protein (.1...		Potri.019G063500 [exp]	0	1
					Potri.013G031800 [exp]	1.00	0.9534
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.010G114000 [exp]	1.41	0.9443	MYB165
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Potri.019G054300 [exp]	3.00	0.9264
					Potri.004G212550 [exp]	3.46	0.9260
AT5G01450			RING/U-box superfamily protein...		Potri.016G116300 [exp]	4.00	0.8950
					Potri.008G005500 [exp]	4.47	0.9184
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014350 [exp]	5.19	0.9042
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	5.29	0.9146
AT2G17710			unknown protein		Potri.005G107800 [exp]	6.32	0.9046
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.007G100600 [exp]	6.70	0.9001

Compare expression of checked genes

Potri.019G063500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.