Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10260 550 / 0 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 447 / 4e-159 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 442 / 6e-157 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 439 / 6e-156 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06030 437 / 4e-155 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 437 / 2e-154 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 424 / 2e-149 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 190 / 1e-56 FLN1 fructokinase-like 1 (.1) AT1G50390 168 / 7e-52 pfkB-like carbohydrate kinase family protein (.1) AT1G69200 156 / 7e-43 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029000 [exp] 445 / 2e-157 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 437 / 4e-155 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 435 / 3e-153 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 430 / 7e-152 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 420 / 5e-148 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 414 / 3e-145 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 175 / 6e-50 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 163 / 4e-46 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.005G220400 [exp] 78 / 1e-15 AT1G06730 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040562 [exp] 542 / 0 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 477 / 3e-171 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 451 / 2e-160 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 451 / 2e-160 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 445 / 7e-158 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 443 / 7e-157 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 442 / 9e-157 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 412 / 2e-144 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 412 / 2e-144 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 342 / 1e-118 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Potri.019G063600.2 pacid=42773673 polypeptide=Potri.019G063600.2.p locus=Potri.019G063600 ID=Potri.019G063600.2.v4.1 annot-version=v4.1 ATGACGACTAACCCTGCCCCATTGATCGTCTCTTTCGGAGAGATGCTCATTGATTTTGTGCCTGATGTTGCTGGAGTTTCATTGGCAGAGTCTGCTGGCT TCATCAAAGCACCTGGTGGCGCACCTGCTAATGTTGCTTGTGCCATCACCAAGCTTGGTGGAAAATCTGCCTTCATTGGCAAGGTTGGAGATGATGAGTT TGGCCACATGCTAGTTGACATCTTGAAGAAGAATGGTGTGAACAGTGAAGGAGTGTGCTATGATCCACATGCCAGAACTGCTTTGGCATTTGTGACCCTG AAGAAAAATGGAGAGAGGGAGTTCATGTTCTATAGAAACCCTAGTGCTGATATGCTACTGCAGGAATCTGAGTTGAACATGGGTCTCCTTAAGCAGGCCA AGGTATTCCACTACGGATCTATAAGTTTGATATCTGAGCCATGCAAATCGGCTCACTTGACAGCCATGAAAGCCGCCAGGGAAGCTGGGATATTGCTTTC TTATGATCCAAATGTGAGGCTGCCTCTGTGGCCGTCTTCTGATGCTGCTAGAGATGGGATCAAGAGCATCTGGAATGAAGCTGATTTCATCAAGGTTAGT GATGATGAGGTATCATTCCTGACACAAGGGGATCCCCAAAAGGAAGATGTGGTTCTGTCCCTCTGGCATGATCGCCTCAAGCTACTTGTTGTCACCGATG GAGAAAAGGGTTGCAGATACTTTACTAAGAGTTTCAAAGGAAGAGTGCCTGGGTTTTCAGTGAAGGTAGTTGATACTACTGGAGCTGGTGATGCTTTTGT TGGTTCACTCCTTCTTTCTGTTGCCAAGGACACTTCAATTTTTGATAATGAAGAGAAACTGAGGGAGGCTTTGTCATTTGCAAATGCATGTGGAGCCATT TGCACAACTCAGAAAGGAGCAATTCCAGCCCTTCCTTCTGGTTCTGATGCTCTTGCACTTATGAAGTCCAAGGCCAACTAG
AA sequence Show only first row Show all	>Potri.019G063600.2 pacid=42773673 polypeptide=Potri.019G063600.2.p locus=Potri.019G063600 ID=Potri.019G063600.2.v4.1 annot-version=v4.1 MTTNPAPLIVSFGEMLIDFVPDVAGVSLAESAGFIKAPGGAPANVACAITKLGGKSAFIGKVGDDEFGHMLVDILKKNGVNSEGVCYDPHARTALAFVTL KKNGEREFMFYRNPSADMLLQESELNMGLLKQAKVFHYGSISLISEPCKSAHLTAMKAAREAGILLSYDPNVRLPLWPSSDAARDGIKSIWNEADFIKVS DDEVSFLTQGDPQKEDVVLSLWHDRLKLLVVTDGEKGCRYFTKSFKGRVPGFSVKVVDTTGAGDAFVGSLLLSVAKDTSIFDNEEKLREALSFANACGAI CTTQKGAIPALPSGSDALALMKSKAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10260			pfkB-like carbohydrate kinase ...		Potri.019G063600 [exp]	0	1
AT1G64650			Major facilitator superfamily ...		Potri.001G085032 [exp]	3.31	0.9672
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004366 [exp]	5.47	0.9800
					Potri.006G127750 [exp]	8.00	0.9630
AT5G20635		AGG3	Arabidopsis G protein gamma su...		Potri.018G062400 [exp]	11.13	0.9179
					Potri.012G026150 [exp]	11.40	0.9716
					Potri.001G004432 [exp]	12.00	0.9615
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Potri.010G103600 [exp]	12.48	0.9645
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.006G078101 [exp]	15.09	0.9429
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.015G112140 [exp]	16.79	0.9325
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.012G049101 [exp]	17.74	0.9585

Compare expression of checked genes

Potri.019G063600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.