Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33340 397 / 1e-137 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 138 / 3e-36 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 139 / 4e-36 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 133 / 3e-34 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 132 / 4e-34 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 132 / 5e-34 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 129 / 5e-33 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 124 / 3e-31 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 124 / 5e-31 ENTH/ANTH/VHS superfamily protein (.1.2) AT5G35200 120 / 8e-30 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118100 [exp] 145 / 8e-39 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 145 / 2e-38 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 142 / 1e-37 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 141 / 6e-37 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 135 / 4e-35 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 134 / 7e-35 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 128 / 1e-32 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G066900 [exp] 128 / 3e-32 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.018G125284 [exp] 122 / 1e-30 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008557 [exp] 385 / 9e-133 AT1G33340 314 / 4e-105 ENTH/ANTH/VHS superfamily protein (.1) Lus10032674 [exp] 308 / 2e-103 AT1G33340 252 / 1e-81 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 144 / 7e-38 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 141 / 4e-37 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 141 / 9e-37 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10001502 [exp] 134 / 2e-34 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10025462 [exp] 133 / 3e-34 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10002920 [exp] 133 / 4e-34 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10021796 [exp] 130 / 2e-33 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 130 / 3e-33 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.019G063700.1 pacid=42774241 polypeptide=Potri.019G063700.1.p locus=Potri.019G063700 ID=Potri.019G063700.1.v4.1 annot-version=v4.1 ATGGGGGTGGACATACAAGGCAAGCTCCGAATAGCTCTTGGCGCAGTGAAGGATCATGCATCAATTGGGAAAGCCATGATCTACAGTCATCATGAAGGGA AGGATTTTTCCAGCATAGAGGTCGCAGTTGTGCGTGCAACTGGCCATGATAGTGGCCCCATTGACGACAAACACATGCATGAGATCCTCTTCTTGGTCTC AAACTCTCCCGGATCCATCCACTTTCTTGCCGAGAGGATTTCTCGCCGCCTTGGCAAGACCAGAGACAACCTGGTTGCCCTCAAGACACTCTCTCTAATT CATCGACTCCTTCGTGGAGGCAATCGATGCTTCGAGCAGCAGCTGCGTAATGCGCATGCTTCAGGCCATCTCCAAATGAGTACTCGCTGCTTCCTAAGGA ACATTTCAGATCCTTCCGTAAGCTTCATACACAAATATGCAGCTTATCTAGAGGAAAGAATAGGGTGGGTCATCAATCAAGCAGGGAAGCTTGAACCTGT TATGTCCCAAGGTGATCTGGAATCTCGATGCTATGATGAAAAGTCCATCGATATGGTGTTCAGAAAATTGCCAAAATGTCAAGTGTTTATAGATAGAGTT TTAGATTGTTCGCCGTTCAATATTTCGCCTTTAGATAATCTTGCTCAAGCAGCTATGAGCAACACCTTGAAAGAGAGCTTCCAAGTTTACAAGAAATACA GTGAAGGTGTAGCAGCTCTTGTTAATATGTTCTTTGATTTAACAAGGGCAGCTAGAGACTTGGCCTGTCAAATACTAAGGAGGGCTTCTCAGCAAAGCCA GGAGCTTCATAATTTGTTTGAGAATTGCAAACGAATTATCGAAAACAAGAACTTGGACTATCCAGTGGTACAAATCGTCACCATGGATCATATTATGGCA CTGGAGCAGTTTTCGACCTATATTGCAACTTCCCGCAGCTCGTCAGTCCTGAGCAAGAATGGTTCAACACCTCCCATTTTGGATTGCATAACAAAGTCAG AAGGTGATGAGAAGGATGCGGGTAATTTTAGCTGGTCACCAACTCTTTTCTCTTGCACATTGGAGACTAAAATAAGCAAGGTGTGGGTGGTTTTTGAAGA TTAA
AA sequence Show only first row Show all	>Potri.019G063700.1 pacid=42774241 polypeptide=Potri.019G063700.1.p locus=Potri.019G063700 ID=Potri.019G063700.1.v4.1 annot-version=v4.1 MGVDIQGKLRIALGAVKDHASIGKAMIYSHHEGKDFSSIEVAVVRATGHDSGPIDDKHMHEILFLVSNSPGSIHFLAERISRRLGKTRDNLVALKTLSLI HRLLRGGNRCFEQQLRNAHASGHLQMSTRCFLRNISDPSVSFIHKYAAYLEERIGWVINQAGKLEPVMSQGDLESRCYDEKSIDMVFRKLPKCQVFIDRV LDCSPFNISPLDNLAQAAMSNTLKESFQVYKKYSEGVAALVNMFFDLTRAARDLACQILRRASQQSQELHNLFENCKRIIENKNLDYPVVQIVTMDHIMA LEQFSTYIATSRSSSVLSKNGSTPPILDCITKSEGDEKDAGNFSWSPTLFSCTLETKISKVWVVFED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Potri.019G063700 [exp]	0	1
AT3G21460			Glutaredoxin family protein (....		Potri.008G214500 [exp]	3.46	0.7548
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Potri.007G106400 [exp]	7.34	0.7743
AT3G63240			DNAse I-like superfamily prote...		Potri.005G212700 [exp]	8.60	0.7847
AT5G66900			Disease resistance protein (CC...		Potri.007G039300 [exp]	11.74	0.7457
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Potri.004G163300 [exp]	14.96	0.7349	Pt-SPE1.1
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.005G150501 [exp]	23.13	0.7534
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Potri.005G202200 [exp]	31.19	0.7382
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.014G016500 [exp]	44.83	0.6713
					Potri.019G090900 [exp]	46.04	0.7143
AT1G65810			P-loop containing nucleoside t...		Potri.008G143000 [exp]	49.07	0.6960

Compare expression of checked genes

Potri.019G063700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.