Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1) AT1G56350 58 / 2e-09 Peptide chain release factor 2 (.1) AT2G47020 55 / 1e-08 Peptide chain release factor 1 (.1.2) AT5G36170 47 / 6e-06 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114000 [exp] 56 / 5e-09 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.013G009200 [exp] 56 / 6e-09 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.008G075800 [exp] 50 / 7e-07 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.010G181600 [exp] 40 / 9e-05 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3) Potri.002G188200 [exp] 42 / 0.0002 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.014G133400 [exp] 42 / 0.0003 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008558 [exp] 227 / 1e-73 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1) Lus10032675 [exp] 142 / 2e-42 AT1G33330 194 / 6e-63 Class I peptide chain release factor (.1) Lus10010922 [exp] 60 / 6e-10 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10031411 [exp] 56 / 9e-09 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10038039 [exp] 54 / 3e-08 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10009980 [exp] 54 / 3e-08 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10036446 [exp] 50 / 9e-07 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10029444 [exp] 45 / 4e-05 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10005944 [exp] 44 / 0.0001 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10041119 [exp] 44 / 0.0001 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0337 [poplar] [flax] RF PF00472 [poplar] [flax] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Potri.019G063800.1 pacid=42773483 polypeptide=Potri.019G063800.1.p locus=Potri.019G063800 ID=Potri.019G063800.1.v4.1 annot-version=v4.1 ATGGCAGTGTCAGCTCATTCGCTACTAAAATCAATGCTTCTCCTCAGACTTCCAATCACAACCAACACCATTGTTCCTTCCCGCATATCTCGTCCATCTT CTTCTCCTTTAAATTTGATCTCTTGCCATTATCTCAACGGTTCTAACAGAACCAAATCAAGACATTTTCACTCACCAACCTTGTACACAAGAACTGCAGA AACCCCAAAAAAACGCTTAATTTGCTTCAATTATAACACTTCTGCAAGTCATGGTAATGGTACAAACTACTTAGAATTGACAGATGATGAACTGATGAGA CAGTGTGAGATGGACACGTTCAAGGCCTCAGGCCCAGGTGGTCAGCACCGTAACAAGCGTGAGTCTGCTGTCCGTCTCAAGCACCTTCCTACTGGGATTA TTGCTCAGGCTGTTGAGGACCGATCACAGCATATGAATCGTGCTTCGGCTTTGAAACGCCTGCGCGCTCTATTAGCTATCAGAGTTAGGAACAGTTTGGA TATTGATTCGTATACACCTCGATTGGAACTGCTTCAAATTCTTCCTCTTAAATCAACAATCAGAGGATCAGATTGTGGTCCACAAATTGGACCCAAGAAT CCTAAATTTATCTTGGGAATGCAAGCGTTGCTGGATCTAATCTTTGCTGTTGACGGCTCTATATCGGAAGCAGGGAAATTACTAGGGTTAAGCACAGGGG CTCTGTCACGTTTGATACTATCAGATGATTCTCTTAGGATGGCAGTGAATGATTTGAGGAATTCGAAGGGTTTAAAGCCTCTAAGGTAG
AA sequence Show only first row Show all	>Potri.019G063800.1 pacid=42773483 polypeptide=Potri.019G063800.1.p locus=Potri.019G063800 ID=Potri.019G063800.1.v4.1 annot-version=v4.1 MAVSAHSLLKSMLLLRLPITTNTIVPSRISRPSSSPLNLISCHYLNGSNRTKSRHFHSPTLYTRTAETPKKRLICFNYNTSASHGNGTNYLELTDDELMR QCEMDTFKASGPGGQHRNKRESAVRLKHLPTGIIAQAVEDRSQHMNRASALKRLRALLAIRVRNSLDIDSYTPRLELLQILPLKSTIRGSDCGPQIGPKN PKFILGMQALLDLIFAVDGSISEAGKLLGLSTGALSRLILSDDSLRMAVNDLRNSKGLKPLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33330			Class I peptide chain release ...		Potri.019G063800 [exp]	0	1
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Potri.013G094500 [exp]	1.00	0.9671
AT3G14330			Tetratricopeptide repeat (TPR)...		Potri.017G137200 [exp]	4.89	0.9423
AT3G53630			unknown protein		Potri.006G082400 [exp]	10.95	0.9296
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	12.08	0.9512
AT3G07860			Ubiquitin-like superfamily pro...		Potri.002G015002 [exp]	12.64	0.9077
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	12.96	0.9441
AT5G50110			S-adenosyl-L-methionine-depend...		Potri.012G076100 [exp]	12.96	0.9415
AT5G09320		VPS9B	Vacuolar sorting protein 9 (VP...		Potri.009G169600 [exp]	14.28	0.9381
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Potri.001G358400 [exp]	14.66	0.9424
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Potri.002G250200 [exp]	16.00	0.9441

Compare expression of checked genes

Potri.019G063800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.