Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38520 447 / 1e-157 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 166 / 1e-47 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 159 / 9e-46 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25290 97 / 1e-21 DNA photolyases;DNA photolyases (.1) AT5G13800 86 / 3e-18 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT4G12830 76 / 7e-15 alpha/beta-Hydrolases superfamily protein (.1) AT1G80280 74 / 3e-14 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 65 / 2e-11 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 62 / 3e-10 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 58 / 7e-09 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121000 [exp] 165 / 3e-47 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 165 / 7e-47 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G129500 [exp] 102 / 2e-23 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.009G054800 [exp] 94 / 1e-20 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.003G059400 [exp] 72 / 3e-13 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 69 / 2e-12 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G175700 [exp] 63 / 1e-10 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G235200 [exp] 56 / 2e-08 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G027300 [exp] 54 / 8e-08 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003969 [exp] 468 / 2e-165 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028315 [exp] 162 / 3e-46 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 160 / 1e-42 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10041763 [exp] 148 / 8e-41 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023788 [exp] 122 / 4e-33 AT5G38520 102 / 5e-26 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 114 / 2e-27 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10019755 [exp] 96 / 4e-21 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10005320 [exp] 92 / 2e-20 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10031716 [exp] 91 / 2e-19 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10016051 [exp] 69 / 3e-12 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.019G063900.2 pacid=42773626 polypeptide=Potri.019G063900.2.p locus=Potri.019G063900 ID=Potri.019G063900.2.v4.1 annot-version=v4.1 ATGGGCTTCTCGGCACTAGCAGTAGCTGCTGAGCTTCCCCTTCATTATTCATCAGTAAATAAAAATGGGGACCGTTTTCTGTGTCAGCAAAGGAAACATG GCCACATTCGTTATTGCAAGAAGCCCGTCTCTTGCAACATCAAGTCTAACATCACTGCTGCTGCCACCAGCGGTAATAATACTGCTACTACTGGTTCCAC CTCATCCTCTTCTTGTGGTGGAAAAGTATTGGAGATTAAAGAGATAAGGGAAAGGTGCAAGAAGTGGTTGTGGAAGGGGCAGTTCTCCATCAATTACTTT GTTTCTTGTAATTCTGATTCACAGTCAAACCCTGGACCTCCTCTTCTTCTTGTTCATGGCTTCGGTGCCTCCATTCCTCACTGGCGCAGGAATATCGATA CATTGGCAAAAAATTATACAGTCTATGCCATCGACCTTCTGGGATTTGGTGCTTCGGATAAGCCAGAAGGCTTTTCATATACCATGGAAGCATGGGCTCA GTTAATTTTAGATTTCTTGGATGAAGTTATTCAGAAGCCAACTGTGCTGATAGGGAACTCTGTTGGGAGTTTAGCTTGCGTAATTGCAGCCTCAGATTCT AGTCAAACTCTGGTTCGAGGGCTTGTGCTGCTGAATTGCTCTGGTGGCATGAACAACAAGGCGATTGTTGATGATTGGAGGATCAAGCTGTTGCTGCCTC TGCTTTGGTTAATTGATTTTCTGCTGAAGCAAAGGGCAATTGCATCGTCGATCTTTGAGCGTGTCAAACAGAGAGATACTCTGAGGAACATTTTATTGTC TGTTTATGGAAATAAGGAATCCGTGGATGAAGACCTTGTAGAGATTATCAGAGGACCAGCATGTGATGAAGGGGCACTCGATGCTTTTGTTTCAATTGTG ACAGGGCCACCAGGGCCGAACCCAGTGACACTGATGCCTGGAATTTCCATACCTATTCTAGTTCTTTGGGGCGATCAAGATCCGTTCACGCCTATTGATG GACCTGTTGGCAAATATTTCTCTTCCTTGCCTTCTCAGCTTTCAAATGTGAGACTTTGTATGCTGGAAGGCGTTGGACACTGTCCTCATGATGACAAACC AGACTTGGTCCATGACAATTTGCTTCCTTGGTTGGCTCATCTTGCTGCTTCATGA
AA sequence Show only first row Show all	>Potri.019G063900.2 pacid=42773626 polypeptide=Potri.019G063900.2.p locus=Potri.019G063900 ID=Potri.019G063900.2.v4.1 annot-version=v4.1 MGFSALAVAAELPLHYSSVNKNGDRFLCQQRKHGHIRYCKKPVSCNIKSNITAAATSGNNTATTGSTSSSSCGGKVLEIKEIRERCKKWLWKGQFSINYF VSCNSDSQSNPGPPLLLVHGFGASIPHWRRNIDTLAKNYTVYAIDLLGFGASDKPEGFSYTMEAWAQLILDFLDEVIQKPTVLIGNSVGSLACVIAASDS SQTLVRGLVLLNCSGGMNNKAIVDDWRIKLLLPLLWLIDFLLKQRAIASSIFERVKQRDTLRNILLSVYGNKESVDEDLVEIIRGPACDEGALDAFVSIV TGPPGPNPVTLMPGISIPILVLWGDQDPFTPIDGPVGKYFSSLPSQLSNVRLCMLEGVGHCPHDDKPDLVHDNLLPWLAHLAAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38520			alpha/beta-Hydrolases superfam...		Potri.019G063900 [exp]	0	1
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.002G215100 [exp]	2.82	0.9865
AT1G06430		FTSH8	FTSH protease 8 (.1)		Potri.002G220366 [exp]	4.00	0.9804
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Potri.001G152600 [exp]	5.29	0.9732	Pt-CTF2.2
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059600 [exp]	5.47	0.9749
AT1G73885			unknown protein		Potri.015G054100 [exp]	5.91	0.9789
					Potri.010G120300 [exp]	6.08	0.9504
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Potri.007G046400 [exp]	7.41	0.9658
AT2G36990		SIG6, SIGF, ATS...	SIGMA FACTOR 6, RNApolymerase ...		Potri.006G125700 [exp]	8.48	0.9654	SIGF.1
AT2G27680			NAD(P)-linked oxidoreductase s...		Potri.009G146000 [exp]	8.48	0.9699
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Potri.006G053000 [exp]	9.48	0.9678

Compare expression of checked genes

Potri.019G063900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.