Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24910 652 / 0 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT5G24900 600 / 0 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT5G52400 346 / 1e-113 CYP715A1 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) AT5G38450 295 / 1e-93 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) AT2G46950 295 / 3e-93 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14640 289 / 2e-91 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT1G67110 288 / 3e-91 CYP735A2 "cytochrome P450, family 735, subfamily A, polypeptide 2", cytochrome P450, family 735, subfamily A, polypeptide 2 (.1) AT4G27710 286 / 1e-90 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT3G14680 285 / 3e-90 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT2G26710 285 / 7e-90 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G160800 [exp] 531 / 0 AT5G24910 468 / 6e-161 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026200 [exp] 516 / 4e-180 AT5G24910 488 / 8e-169 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026300 [exp] 509 / 3e-177 AT5G24910 486 / 5e-168 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.010G116300 [exp] 400 / 1e-134 AT5G24910 376 / 3e-125 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.015G145100 [exp] 355 / 9e-117 AT5G52400 646 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.012G142000 [exp] 341 / 1e-111 AT5G52400 622 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.017G114200 [exp] 327 / 3e-106 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 321 / 8e-104 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.011G098800 [exp] 304 / 3e-97 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008423 [exp] 465 / 1e-159 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10039234 [exp] 360 / 4e-119 AT5G52400 653 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Lus10033555 [exp] 314 / 6e-101 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10017595 [exp] 313 / 1e-100 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10026085 [exp] 308 / 8e-99 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10026084 [exp] 298 / 1e-94 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10033044 [exp] 292 / 4e-92 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017775 [exp] 294 / 5e-92 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10025756 [exp] 291 / 5e-92 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10004633 [exp] 289 / 1e-91 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.019G064200.1 pacid=42773765 polypeptide=Potri.019G064200.1.p locus=Potri.019G064200 ID=Potri.019G064200.1.v4.1 annot-version=v4.1 ATGGAGGTCTCTCTTCCTTGCCTGCGACTGGTTTCTTCTCTAACCCTTCTTGCACTGGTTTTCTTCCTGGTGCACGTCTGCTACACTGTCTTGCTGAAGT CGGAGAGGATCAAGAGGAAGCTTAGAATGCAAGGCATACAAGGACCACCGCCATCTTTCCTGTATGGGAATCTCCCTGAGATGCAGAAAATCCAGTTGAA CACTCTCAAAGCTTCCAGTTTTCAAGCTCCAGATTTCATAGCCCATGACTACACTTCTACAGTCTTCCCGTACTTTGAACAGTGGAGAAAAGAATACGGT CCAGTATACACGTATTCAACAGGATTGAGGCAACACTTGTATGTAAATCAGCCGGAGCTAGTGAAGGAGATGAACCAGATGATTTCTTTGGATTTAGGCA AACCTTCTTACTTGACCAAGAGAATGGCGCCTTTGCTCGGAAATGGCATCGTGAGGTCAAATGGCCTTGTATGGGCTCAGCAGAGGAAAATAGTCGCGCC TGAGTTCTACATGGACAAGGTCAAGGGAATGGTGGGGCTAATGGTGGAGTCAGCACAGCCATTGCTAAAGAAATGGGAAGAGTGCATTGAGGCCCAGGGT GGCATCACAGCTGATGTTAAGGTAGACGAGGATCTGAGAGAGCTCTCTGCAAATGTCATCTCAAGGGCTTGCTTTGGTAGCTCATATTCTAAAGGCAAAC AGATATTTTCTAAGCTCAGGAGTCTTCAACAAACATTTTCCAATCAAAACATCCTCTTTGGGGTTACTAATTTTGGATTCTTACCAGTGAAGAAGCAAAA CAAGATCAGCAATCTGGAGAGAGAGGTCGAGTCACTGATTTGGGAGGCAGTGAAAGAACGTCGACAAGAATGTCAAGAGACAAATTCATCAGAAAAAGAT TTAATGCTGTTACTTCTTGAAGGTGCCATCAATGATCAAAGTCTGGGCAAGGATGCATCCAAGAGCTTCGTAGTTGATAACTGCAAGACTATATACTTTG CTGGTCATGAATCAACGGCTGTTGCCGCCTCCTGGTGCTTGATGCTACTTGCTTTACATCCAGAATGGCAAGGTGGTATAAGGAAAGAACTAGCTGAAAT ATCCAAGGATGGCTTGCTATCTGTGGATTCACTCCATCATCTGAAAACGGTGACGATGGTGATTCAAGAAGCCCTCCGCCTGTACCCACCAGCAGCATTT GTATCAAGAGAAGCACTTGAAGAAACCCAACTCGGAAACATTGTTGTTTCAAAGGGCGTATGTTTATGGACGTTGATACCGACATTACATAGAGATCCTG CAGTATGGGGATCTGATGCTAACGAGTTCAAACCTGAGAGGTTCACCTGGGGCGTCTCGAAAGCTTGCAAGTGCCCTCAAGCTTACATTCCGTTTGGGGT CGGCCCTCGCCTGTGCTTGGGCAAGAACTTCGCCATGGTTGAATTGAAGGTTGTCCTCTCCCTCATTGTTTCCAAGTTTAGCTTCTCCTTGTCTCCCAAG TATCATCACTCTCCTGCTTATAGAATGATTGTAGAACCCGGAGATGGTGTACAGATTCTCATTCAAAAGATTTGA
AA sequence Show only first row Show all	>Potri.019G064200.1 pacid=42773765 polypeptide=Potri.019G064200.1.p locus=Potri.019G064200 ID=Potri.019G064200.1.v4.1 annot-version=v4.1 MEVSLPCLRLVSSLTLLALVFFLVHVCYTVLLKSERIKRKLRMQGIQGPPPSFLYGNLPEMQKIQLNTLKASSFQAPDFIAHDYTSTVFPYFEQWRKEYG PVYTYSTGLRQHLYVNQPELVKEMNQMISLDLGKPSYLTKRMAPLLGNGIVRSNGLVWAQQRKIVAPEFYMDKVKGMVGLMVESAQPLLKKWEECIEAQG GITADVKVDEDLRELSANVISRACFGSSYSKGKQIFSKLRSLQQTFSNQNILFGVTNFGFLPVKKQNKISNLEREVESLIWEAVKERRQECQETNSSEKD LMLLLLEGAINDQSLGKDASKSFVVDNCKTIYFAGHESTAVAASWCLMLLALHPEWQGGIRKELAEISKDGLLSVDSLHHLKTVTMVIQEALRLYPPAAF VSREALEETQLGNIVVSKGVCLWTLIPTLHRDPAVWGSDANEFKPERFTWGVSKACKCPQAYIPFGVGPRLCLGKNFAMVELKVVLSLIVSKFSFSLSPK YHHSPAYRMIVEPGDGVQILIQKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.019G064200 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.014G145100 [exp]	6.78	0.8345	Pt-CHS.7
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.004G105000 [exp]	7.93	0.8284
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.006G209000 [exp]	8.94	0.8161
AT3G24750			unknown protein		Potri.002G240300 [exp]	10.95	0.8014
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113700 [exp]	11.83	0.8117
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176800 [exp]	12.24	0.8082	CHS.5
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176900 [exp]	15.29	0.7984	CHS6,Pt-CHS.4
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.002G033600 [exp]	16.58	0.7892	DFR1,Pt-DFR.2
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.015G050200 [exp]	21.49	0.7781
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.019G066200 [exp]	21.63	0.6481

Compare expression of checked genes

Potri.019G064200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.