Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03230 290 / 4e-94 Eukaryotic aspartyl protease family protein (.1) AT1G03220 289 / 1e-93 Eukaryotic aspartyl protease family protein (.1) AT5G19110 132 / 3e-34 Eukaryotic aspartyl protease family protein (.1) AT5G19100 114 / 6e-28 Eukaryotic aspartyl protease family protein (.1) AT5G48430 102 / 2e-23 Eukaryotic aspartyl protease family protein (.1) AT5G19120 101 / 2e-23 Eukaryotic aspartyl protease family protein (.1) AT5G02190 52 / 8e-07 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT1G79720 48 / 9e-06 Eukaryotic aspartyl protease family protein (.1) AT2G39710 44 / 0.0002 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240600 [exp] 718 / 0 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 644 / 0 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 625 / 0 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1) Potri.019G064800 [exp] 615 / 0 AT1G03230 290 / 1e-93 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 613 / 0 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 502 / 1e-176 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 439 / 8e-152 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 435 / 2e-150 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1) Potri.008G203200 [exp] 299 / 2e-97 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041224 [exp] 296 / 4e-96 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 287 / 1e-92 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 275 / 2e-88 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 271 / 3e-86 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 230 / 1e-70 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 206 / 6e-62 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 197 / 3e-58 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10034036 [exp] 177 / 3e-50 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10034035 [exp] 148 / 1e-39 AT1G03220 260 / 2e-82 Eukaryotic aspartyl protease family protein (.1) Lus10021939 [exp] 137 / 4e-36 AT5G19120 228 / 4e-71 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.019G064700.2 pacid=42774648 polypeptide=Potri.019G064700.2.p locus=Potri.019G064700 ID=Potri.019G064700.2.v4.1 annot-version=v4.1 ATGTTAATGGCAAAGCTAGCCGTCCCTCTTCTAAGTCTTTTCTTCTTCCTATCTTTTATCTCTTCTCAGGCAGCTCTTCCCCTCCAAACACCGATCCAGA AGGACCATTCAACCAGCCAATATGTCATCACTGCATACCTACAAACCCCTCTCAAGCTCACCAAATTGCTCTTGGACCTTGGCGCTACATTCACCTGGGT AAATTGCGACGACTACACTTCCTTGACTTACCAACATGTCCCCTGTAACAGTTCCATCGCTAATTTACTTGGCGCTTATACTTGCTTGGACCTTTGCGAC GGTCCGCCAAGTCCAAATTGTGGTAACAACTCTTTCCTCTTCCTCCCTGATAACCCCATCAAACCTGTTGACTACAGAAAAGTTGATGGCCTCAACACTG CCCTTATTGACTCCTTCGCCTTGCCCAACACACAAGGTTCTCTTACTTTGATCAATAATTTCATCTTTTCTTGTGCTCGAACTGGTTTTCTCAAAGGCCT AGCTAAAGGTGTCACTGGCTTAGCGGCCTTGGGGGACTCAAATATATCTATCCCGATACAGATCAACAAAGTCTTCTCTTCTTCTCCAAATTGTTTTGCC ATCTGCTTGTCAGGATCCAAATCTCAACCTGGCGTGGCTCTTTTCGGTAGCAATGGGCCTTATAATTTTTTGCCAGGGATTGACCTCTCAAAAGCACTTC TTTACACTCCTCTCATTTTGAACCCGTTTGGAAAAGATTCTGAACCAGATAAACCCACACCCTCTTCTGAATATTATATAGGGTTGACTTCCATGAAAGT GAACGGAAAGATGGTGGCTTTGAACAGATCACTATTGGCCATTAATGGTAAGACTGGTTCTGGGGGGACCAAGATCAGCACTGTTGTGCCATACACAAAG TTACAGAGTTCTATTTACAAGGCTTTTATTCTGGCTTTTTTGAAGGAAGCAGTTTCATCTGCTTTCAATCTTACTACAACAAAGCCTGTTAAGCCATTCA GTGTCTGCTACCCTGCGAGTGCTGTTAAGAACACACAAATGGGACCTGCTGTACCAATAATAGATCTTGTGTTGGATAGACCAGATGTGGTTTGGAAGAT TTTTGGATCGAATTCTATGGTGAGGATTACGAAGAAAACAGTTGACCTTTGGTGTCTGGGTTTTATGGATGCTGGGGTCAATCCAATGGTATCGAATTGG ATTGGAGGTCCATCTATAGTGATTGGTGGTTATCAATTGGAGGATAACATGCTAAAATTCGATCTACAGTCAAAGAAATTGGGATTCAGCTCATCAATTT TGTCAGTAGGGACAAATTGTGCCAAATTCAAATTTTCCACCAAATGA
AA sequence Show only first row Show all	>Potri.019G064700.2 pacid=42774648 polypeptide=Potri.019G064700.2.p locus=Potri.019G064700 ID=Potri.019G064700.2.v4.1 annot-version=v4.1 MLMAKLAVPLLSLFFFLSFISSQAALPLQTPIQKDHSTSQYVITAYLQTPLKLTKLLLDLGATFTWVNCDDYTSLTYQHVPCNSSIANLLGAYTCLDLCD GPPSPNCGNNSFLFLPDNPIKPVDYRKVDGLNTALIDSFALPNTQGSLTLINNFIFSCARTGFLKGLAKGVTGLAALGDSNISIPIQINKVFSSSPNCFA ICLSGSKSQPGVALFGSNGPYNFLPGIDLSKALLYTPLILNPFGKDSEPDKPTPSSEYYIGLTSMKVNGKMVALNRSLLAINGKTGSGGTKISTVVPYTK LQSSIYKAFILAFLKEAVSSAFNLTTTKPVKPFSVCYPASAVKNTQMGPAVPIIDLVLDRPDVVWKIFGSNSMVRITKKTVDLWCLGFMDAGVNPMVSNW IGGPSIVIGGYQLEDNMLKFDLQSKKLGFSSSILSVGTNCAKFKFSTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	0	1
AT5G12460			Protein of unknown function (D...		Potri.009G051600 [exp]	1.41	0.9294
AT1G45688			unknown protein		Potri.007G045000 [exp]	2.82	0.8999
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Potri.017G109600 [exp]	3.46	0.8839
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	3.46	0.9268
AT2G25735			unknown protein		Potri.006G244200 [exp]	3.74	0.8800
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.016G049400 [exp]	4.47	0.8915	PGIP.3
AT4G23020			unknown protein		Potri.003G121100 [exp]	6.00	0.8062
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.003G111300 [exp]	6.00	0.8417
AT1G19020			unknown protein		Potri.015G070700 [exp]	6.32	0.8727
AT4G28650			Leucine-rich repeat transmembr...		Potri.002G256500 [exp]	7.21	0.8587

Compare expression of checked genes

Potri.019G064700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.