Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) AT1G03230 296 / 1e-96 Eukaryotic aspartyl protease family protein (.1) AT5G19110 145 / 5e-39 Eukaryotic aspartyl protease family protein (.1) AT5G19120 126 / 2e-32 Eukaryotic aspartyl protease family protein (.1) AT5G19100 125 / 1e-31 Eukaryotic aspartyl protease family protein (.1) AT5G48430 123 / 4e-31 Eukaryotic aspartyl protease family protein (.1) AT5G02190 62 / 2e-10 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT2G36670 61 / 6e-10 Eukaryotic aspartyl protease family protein (.1.2) AT1G25510 60 / 2e-09 Eukaryotic aspartyl protease family protein (.1) AT5G22850 59 / 5e-09 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G065000 [exp] 785 / 0 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 743 / 0 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.019G064800 [exp] 723 / 0 AT1G03230 290 / 1e-93 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 628 / 0 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.019G064700 [exp] 602 / 0 AT1G03230 291 / 3e-94 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 471 / 1e-164 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 406 / 4e-139 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 400 / 1e-136 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 295 / 1e-95 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041224 [exp] 307 / 3e-100 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 298 / 8e-97 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 296 / 5e-96 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 291 / 9e-95 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 233 / 7e-72 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 226 / 1e-69 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 210 / 2e-63 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10034036 [exp] 206 / 4e-61 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 178 / 1e-51 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1) Lus10034035 [exp] 166 / 4e-46 AT1G03220 260 / 2e-82 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.019G065100.1 pacid=42773741 polypeptide=Potri.019G065100.1.p locus=Potri.019G065100 ID=Potri.019G065100.1.v4.1 annot-version=v4.1 ATGGCAAAGCTAGCAGTCCCTCTTCTGATTTTTTTCTTCCTCTTATCGTGTATCCCTTCTCAAGCAGCTCCTCCCCTCCAAACGCCCCTCCAAACGCCAA TCCAGAAGGACCATTCAACCAGCCAATATATCATCACTGCATACCTAAAAACCCCTCTCATGCCCACCAAATTGGTCTTGGATCTTGGTGCTACATACAG CTGGGTAAATTGCGACGACTACATTTCCTCCACTTACCAACATGTCCCCTGTAACAGTTCCATCTTTTATTCTCTTAGTGCTTATGGTTGCGAGGACATT TGCGACGGTCCACCGGGTCCAAATTGTGCAAACAACTCTTTCATCTTCCTCCTTGACGGACCCCTCGAAACTGTTGACTACAAAAAAGTTAATAGCCTCA ACGACGCCCTTGTTGACTATCTCGCCTTGCTCAATAACCTAGGCTCTCTTTCCTCGATCGATAATTTCATCTTTTCCTGTGCCCGAACTGGTTTTCTGAA AGGCCTGGCTAAGGGTGTAACTGGCTTAGCCTCCCTGGGCAACTCAAACCTCTCAATCCCAGTACAGATCAATAAAGCCTTCTCTTCCTCTCCAAATTGT TTTGCTATGTGCTTGTCAGGATCCATCTCTCAACCTGGTGTGGCTCTTTTCGGTAGTAAGGGGCCTTATAATTTCTTGCATGGAATTGACCTCTCAAAAT CACTTCTTTACACTCCTCTTATTTTTAACCCGTTTGGAAGAGATTCTGATCCGTATACCCAGAGATCTCCTGAGTATTATGTAGGGCTGACTTCCATAAA AGTGAACGGAGAGATGGTGGCTTTTAACAAAGCGCTGTTGGCCTTTAATGATCGAGGTTATGGGGGGACCAGGATTAGCACTCTTGTGCCATACACGAAG TTACAGAGTTCTATTTACAAGGCTTTTACTCTGGCTTTCTTGAAGGAAGCAGCTTCCTCTGCTTTCAATCTTACTACAACAAAGCCTGTCAAGCCATTCA GAGTCTGCTACCCTGCGCGTGCTGTGAAGACTACACAAATGGGACCGGCTGTACCAATAATCGAACTTGTGTTGGATAGACAAGATGTGGTTTGGAAGAT ATTTGGATCGAACTCTATGGTGAGGGTTACAAAGAAGAGTGTTGATCTTTGGTGCTTGGGTTTTGTGGATGGTGGGATTGATGGCCCATCGATCATGATT GGTGGTCTTCAGTTGGAGGACAATTTGCTACAATTCGATCTACAGTCACAGAAACTGGGTTTCAGTTCATCAATTTTGTCCAAGGGGACCAATTGCGCAG ACTACGAATTTCCTACCAGAAAAGTCTAA
AA sequence Show only first row Show all	>Potri.019G065100.1 pacid=42773741 polypeptide=Potri.019G065100.1.p locus=Potri.019G065100 ID=Potri.019G065100.1.v4.1 annot-version=v4.1 MAKLAVPLLIFFFLLSCIPSQAAPPLQTPLQTPIQKDHSTSQYIITAYLKTPLMPTKLVLDLGATYSWVNCDDYISSTYQHVPCNSSIFYSLSAYGCEDI CDGPPGPNCANNSFIFLLDGPLETVDYKKVNSLNDALVDYLALLNNLGSLSSIDNFIFSCARTGFLKGLAKGVTGLASLGNSNLSIPVQINKAFSSSPNC FAMCLSGSISQPGVALFGSKGPYNFLHGIDLSKSLLYTPLIFNPFGRDSDPYTQRSPEYYVGLTSIKVNGEMVAFNKALLAFNDRGYGGTRISTLVPYTK LQSSIYKAFTLAFLKEAASSAFNLTTTKPVKPFRVCYPARAVKTTQMGPAVPIIELVLDRQDVVWKIFGSNSMVRVTKKSVDLWCLGFVDGGIDGPSIMI GGLQLEDNLLQFDLQSQKLGFSSSILSKGTNCADYEFPTRKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03220			Eukaryotic aspartyl protease f...		Potri.019G065100 [exp]	0	1
AT3G29970			B12D protein (.1)		Potri.004G117300 [exp]	1.41	0.9807
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064800 [exp]	3.46	0.9647
AT1G80440			Galactose oxidase/kelch repeat...		Potri.001G178300 [exp]	4.47	0.9597
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Potri.002G202400 [exp]	5.74	0.9124
					Potri.004G147966 [exp]	6.00	0.9667
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218201 [exp]	7.74	0.9590
AT3G05550			Hypoxia-responsive family prot...		Potri.019G056000 [exp]	8.94	0.9546
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G065200 [exp]	9.74	0.9428
AT4G10270			Wound-responsive family protei...		Potri.013G148000 [exp]	9.89	0.9556
AT2G23640		RTNLB13	Reticulan like protein B13 (.1...		Potri.007G038500 [exp]	10.29	0.6736

Compare expression of checked genes

Potri.019G065100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.